PredictCellType: Predict cell type annotation from the trained model

In MethScope: Ultra-Fast Analysis of Sparse DNA Methylome via Recurrent Pattern Encoding

Predict cell type annotation from the trained model

Description

Predict cell type annotation from the trained model

Usage

PredictCellType(bst_model, predictMatrix, smooth = FALSE, KNeighbor = 5)

Arguments

bst_model	The boosting model trained from ModelTrain
predictMatrix	A wide cell by pattern matrix generated from GenerateInput function
smooth	A Boolean variable to indicate whether smooth the matrix (Default: FALSE)
KNeighbor	number of knn neighbors to use for smoothing (Default: 5)

Value

A cell by cell type matrix with confidence score and labeled cell type.

Examples

qry <- system.file("extdata", "toy.cg", package = "MethScope")
msk <- system.file("extdata", "toy.cm", package = "MethScope")
res <- GenerateInput(qry, msk)
## Not run: 
prediction <- PredictCellType(Liu2021_MouseBrain_P1000,res)

## End(Not run)

MethScope documentation built on Feb. 27, 2026, 1:08 a.m.