MiscMetabar-deprecated: Deprecated function(s) in the MiscMetabar package

In MiscMetabar: Miscellaneous Functions for Metabarcoding Analysis

Deprecated function(s) in the MiscMetabar package

Description

These functions are provided for compatibility with older version of the MiscMetabar package. They may eventually be completely removed.

Usage

physeq_graph_test(...)

Arguments

...	Parameters to be passed on to the modern version of the function

Value

Depend on the functions.

Details

graph_test_pq	now a synonym for physeq_graph_test
adonis_pq	now a synonym for adonis_phyloseq
clean_pq	now a synonym for clean_physeq
lulu_pq	now a synonym for lulu_phyloseq
circle_pq	now a synonym for otu_circle
biplot_pq	now a synonym for biplot_physeq
read_pq	now a synonym for read_phyloseq
write_pq	now a synonym for write_phyloseq
sankey_pq	now a synonym for sankey_phyloseq
summary_plot_pq	now a synonym for summary_plot_phyloseq
plot_edgeR_pq	now a synonym for plot_edgeR_phyloseq
plot_deseq2_pq	now a synonym for plot_deseq2_phyloseq
venn_pq	now a synonym for venn_phyloseq
ggvenn_pq	now a synonym for ggVenn_phyloseq
hill_tuckey_pq	now a synonym for hill_tuckey_phyloseq
hill_pq	now a synonym for hill_phyloseq
heat_tree_pq	now a synonym for physeq_heat_tree
compare_pairs_pq	now a synonym for multiple_share_bisamples

MiscMetabar documentation built on June 21, 2025, 5:09 p.m.