merge_krona: Merge Krona files using KronaTools.

In MiscMetabar: Miscellaneous Functions for Metabarcoding Analysis

Merge Krona files using KronaTools.

Description

Need the installation of kronatools on the computer (installation instruction).

Function merge_krona allows merging multiple html files in one interactive krona file

Note that you need to use the name args in krona() function before merge_krona() in order to give good name to each krona pie in the output.

Usage

merge_krona(files = NULL, output = "mergeKrona.html")

Arguments

files	(required) path to html files to merged
output	path to the output file

Details

This function is mainly a wrapper of the work of others. Please cite Krona if you use this function.

Value

A html file

Author(s)

Adrien Taudière

See Also

krona

Examples

## Not run: 
data("GlobalPatterns", package = "phyloseq")
GA <- subset_taxa(GlobalPatterns, Phylum == "Acidobacteria")
krona(GA, "Number.of.sequences.html", name = "Nb_seq_GP_acidobacteria")
krona(GA, "Number.of.ASVs.html", nb_seq = FALSE, name = "Nb_asv_GP_acidobacteria")
merge_krona(c("Number.of.sequences.html", "Number.of.ASVs.html"), "mergeKrona.html")
unlink(c("Number.of.sequences.html", "Number.of.ASVs.html", "mergeKrona.html"))

## End(Not run)

MiscMetabar documentation built on Oct. 8, 2024, 1:07 a.m.