DDX39_100: DDX39 exon data with 100 exons
In NBBttest: Negative Binomial Beta t-Test
DDX39_100 R Documentation
DDX39 exon data with 100 exons
Description
DDX39_100 dataset is an example for implementing annotation of genes within there are some exons with gtf.
Usage
data("DDX39_100")
Format
A data frame with 100 observations on the following 14 variables.
Xa numeric vector
gene_ida factor with ENSG levels
CTL_1_S3a numeric vector
CTL_2_S7a numeric vector
CTL_3_S11a numeric vector
DDX39_1_S1a numeric vector
DDX39_2_S5a numeric vector
DDX3_S9a numeric vector
tvaluea numeric vector
rhoa numeric vector
dfa numeric vector
pvaluea numeric vector
adjpa numeric vector
wa numeric vector
Details
DDX39_100 is dataset that was RNA-seq data from human cell breast cells with knockout DDX39 gene. DDX39 RNA-seq reads were mapped to human reference annotated with GRCh38 by HTseq with DEXseq annotation and generated count data of RNA reads of exons within genes. DDX39_100 is output of NBBttest where X is row order column; gene_id is ENSG ID; CTL is control cells with replicates 1, 2,and 3; DDX39 is treatment cells with knockout gene DDX39; tvalue is NBBttest t-statistic; rho is exon-wise variable of NBBttest; df is degree of freedom; pvalue is p-value for t-statistics and w is threshold of rho.
Examples
data(DDX39_100)
NBBttest documentation built on May 30, 2022, 1:05 a.m.
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| DDX39_100 | R Documentation |
DDX39 exon data with 100 exons
Description
DDX39_100 dataset is an example for implementing annotation of genes within there are some exons with gtf.
Usage
data("DDX39_100")
Format
A data frame with 100 observations on the following 14 variables.
Xa numeric vector
gene_ida factor with ENSG levels
CTL_1_S3a numeric vector
CTL_2_S7a numeric vector
CTL_3_S11a numeric vector
DDX39_1_S1a numeric vector
DDX39_2_S5a numeric vector
DDX3_S9a numeric vector
tvaluea numeric vector
rhoa numeric vector
dfa numeric vector
pvaluea numeric vector
adjpa numeric vector
wa numeric vector
Details
DDX39_100 is dataset that was RNA-seq data from human cell breast cells with knockout DDX39 gene. DDX39 RNA-seq reads were mapped to human reference annotated with GRCh38 by HTseq with DEXseq annotation and generated count data of RNA reads of exons within genes. DDX39_100 is output of NBBttest where X is row order column; gene_id is ENSG ID; CTL is control cells with replicates 1, 2,and 3; DDX39 is treatment cells with knockout gene DDX39; tvalue is NBBttest t-statistic; rho is exon-wise variable of NBBttest; df is degree of freedom; pvalue is p-value for t-statistics and w is threshold of rho.
Examples
data(DDX39_100)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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