DDX39_100: DDX39 exon data with 100 exons

Description Usage Format Details Examples

Description

DDX39_100 dataset is an example for implementing annotation of genes within there are some exons with gtf.

Usage

1
data("DDX39_100")

Format

A data frame with 100 observations on the following 14 variables.

X

a numeric vector

gene_id

a factor with ENSG levels

CTL_1_S3

a numeric vector

CTL_2_S7

a numeric vector

CTL_3_S11

a numeric vector

DDX39_1_S1

a numeric vector

DDX39_2_S5

a numeric vector

DDX3_S9

a numeric vector

tvalue

a numeric vector

rho

a numeric vector

df

a numeric vector

pvalue

a numeric vector

adjp

a numeric vector

w

a numeric vector

Details

DDX39_100 is dataset that was RNA-seq data from human cell breast cells with knockout DDX39 gene. DDX39 RNA-seq reads were mapped to human reference annotated with GRCh38 by HTseq with DEXseq annotation and generated count data of RNA reads of exons within genes. DDX39_100 is output of NBBttest where X is row order column; gene_id is ENSG ID; CTL is control cells with replicates 1, 2,and 3; DDX39 is treatment cells with knockout gene DDX39; tvalue is NBBttest t-statistic; rho is exon-wise variable of NBBttest; df is degree of freedom; pvalue is p-value for t-statistics and w is threshold of rho.

Examples

1

NBBttest documentation built on July 2, 2020, 3:37 a.m.