upGAm: Count data of group A treated breast cancer in mice

upGAmR Documentation

Count data of group A treated breast cancer in mice

Description

Data of RNA-seq reads were obtained from drug treated breast cancer in mice and mapped by using STAR onto mm10 to create count data. Dataset upGAm is output of NBBttest.

Usage

data("upGAm")

Format

A data frame with 263 observations on the following 19 variables.

gene

a factor with 263 DE genes

A.2_S35S

a numeric vector

A.4_S36S

a numeric vector

A.42_S45S

a numeric vector

A.39_S41S

a numeric vector

A.9_S44R

a numeric vector

A.12_S40R

a numeric vector

A.18_S37R

a numeric vector

A.29_S39R

a numeric vector

A.31_S38R

a numeric vector

A.38_S34R

a numeric vector

tvalue

a numeric vector

rho

a numeric vector

pvalue

a numeric vector

adjp

a numeric vector

w

a numeric vector

order

a numeric vector

FDR

a numeric vector

significance

a numeric vector

Details

This dataset is a demo dataset having 263 DE genes identifiedby NBBttest. The dataset was created from types of two tomur cells: sensitive to drug(S) and resistant to drug (R). 4 sensitive cells and 6 resistant cells are available for differential analysis. Tvalue is t-statistic, ρ is gene-wise variable, pvalue is p-value for t-test, ω is threshold for ρ, FDR is false discovery rate, significance = 1 if pvalue < FDR, 0, otherwise.

Examples

data(upGAm)

NBBttest documentation built on May 30, 2022, 1:05 a.m.