simSplicing: Simulated alternative splicing

In NBBttest: Negative Binomial Beta t-Test

Simulated alternative splicing

Description

This alternative splicing count data were created by simulating dorsal and ventral RNA-sequence count data.

Usage

data("simSplicing")

Format

A data frame with 5000 observations on the following 9 variables.

Isoform

a factor with levels

geneid

a factor with levels

label

a numeric vector

D1

a numeric vector

D2

a numeric vector

D3

a numeric vector

V1

a numeric vector

V2

a numeric vector

V3

a numeric vector

Details

D1-D3 are samples from mouse dorsal tissue and V1-V3 are samples from mouse ventral tissue. This dataset was simulated with negative binomial ditribution with 10 percent of isoforms of being differentially spliced and differential effect of 500U where U is uniform variable.

Examples

data(simSplicing)

NBBttest documentation built on May 30, 2022, 1:05 a.m.