exondata: Exon data for NBBplot

In NBBttest: Negative Binomial Beta t-Test

Exon data for NBBplot

Description

This dataset is an example for NBBplot to show differential exons within genes between two conditions.

Usage

data("exondata")

Format

A data frame with 16 observations on the following 22 variables.

ID

a factor with levels ENSMUSG00000015597:E1 ENSMUSG00000015597:E10 ENSMUSG00000015597:E2 ENSMUSG00000015597:E3 ENSMUSG00000015597:E4 ENSMUSG00000015597:E5 ENSMUSG00000015597:E6 ENSMUSG00000015597:E7 ENSMUSG00000015597:E8 ENSMUSG00000015597:E9 ENSMUSG00000079547:E1 ENSMUSG00000079547:E2 ENSMUSG00000079547:E3 ENSMUSG00000079547:E4 ENSMUSG00000079547:E5 ENSMUSG00000079547:E6

chr

a numeric vector

element

a factor with levels exon

start

a numeric vector

end

a numeric vector

strand

a factor with levels +

gene_id

a factor with levels ENSMUSG00000015597 ENSMUSG00000079547

exon

a numeric vector

gene

a factor with levels H2-DMb1 Zfp318

WT_28

a numeric vector

WT_43

a numeric vector

A25_f0

a numeric vector

cKO_30

a numeric vector

A26_cKO

a numeric vector

A6_f0

a numeric vector

tv

a numeric vector

rho

a numeric vector

pvalue

a numeric vector

w

a numeric vector

order_number

a numeric vector

FDR0.05

a numeric vector

significance

a numeric vector

Details

This dataset is an object of NBBttest and annoted with a R function. It contains columns start and end, gene,isoform, tv and pvalue, data, significance that NBBplut uses. WT and A25 are count data from wild type cell lines 28,43 and fo and A and cKO are also count data from knockout a gene, tv is t-statistic, rho is exon-wise variable and w is threshold of rho. Column "significance" is 1 if pvalue < FDR0.05, 0, otherwise. Gene Zfp318 has 10 exons and H2-DMb1 has 6 exons.

Examples

data(exondata)

NBBttest documentation built on May 30, 2022, 1:05 a.m.