cluster_mat: Cluster Matrix Rows in Annotated Heatmaps

In NMF: Algorithms and Framework for Nonnegative Matrix Factorization (NMF)

Cluster Matrix Rows in Annotated Heatmaps

Description

Cluster Matrix Rows in Annotated Heatmaps

Usage

  cluster_mat(mat, param, distfun, hclustfun, reorderfun,
    na.rm = TRUE, subset = NULL, verbose = FALSE)

Arguments

mat	original input matrix that has already been appropriately subset in the caller function (aheatmap)
param	clustering specifications
distfun	Default distance method/function
hclustfun	Default clustering (linkage) method/function
reorderfun	Default reordering function
na.rm	Logical that specifies if NA values should be removed
subset	index (integer) vector specifying the subset indexes used to subset mat. This is required to be able to return the original indexes.

NMF documentation built on Sept. 11, 2024, 8:34 p.m.