NMF
Algorithms and Framework for Nonnegative Matrix Factorization (NMF)

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NMF: Algorithms and Framework for Nonnegative Matrix Factorization (NMF)
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API

API for NMF
Algorithms and Framework for Nonnegative Matrix Factorization (NMF)

Global functions
$,NMF-method Man page
$<-,NMF-method Man page
.DollarNames,NMF-method Man page
.DollarNames.NMF Source code
.KL Source code
.as.numeric Source code
.atrack Man page
.atrack,ANY-method Man page
.atrack,ExpressionSet-method Man page
.atrack,character-method Man page
.atrack,data.frame-method Man page
.atrack,matrix-method Man page
.atrack-methods Man page
.basis Man page
.basis,NMF-method Man page
.basis,NMFfit-method Man page
.basis,NMFstd-method Man page
.basis-methods Man page
.basis<- Man page
.basis<-,NMF,matrix-method Man page
.basis<-,NMFfit,matrix-method Man page
.basis<-,NMFstd,matrix-method Man page
.basis<--methods Man page
.checkResult Source code
.cl_cleanup Source code
.coef Man page
.coef,NMF-method Man page
.coef,NMFfit-method Man page
.coef,NMFstd-method Man page
.coef-methods Man page
.coef<- Man page
.coef<-,NMF,matrix-method Man page
.coef<-,NMFfit,matrix-method Man page
.coef<-,NMFstd,matrix-method Man page
.coef<--methods Man page
.compare_NMF Source code
.cssls Source code
.extract.args Source code
.extract.slots.parameters Source code
.fcnnls Man page Source code
.foreach_regfun Source code
.getExtraEnv Source code
.getRNG Man page
.getRNG,NMFfitXn-method Man page
.getRNG-methods Man page
.init.nmf.models Source code
.list_or_named_dots Source code
.make_annotation Source code
.match.call.args Source code
.merge.override Source code
.neg Source code
.nndsvd.internal Source code
.nndsvd.wrapper Source code
.norm Source code
.onAttach Source code
.onLoad Source code
.onLoad.nmf.bioc Source code
.onUnload Source code
.options Source code
.packageMetaRegistry Source code
.pos Source code
.predict.nmf Source code
.rss Source code
.seqtime Source code
.set.list.defaults Source code
.showFixedTerms Source code
.snmf Source code
.snmf.objective Source code
.translate.string Source code
.update_pkgreg Source code
.use.grid.patch Man page Source code
.validFunctionSlot Source code
.wrapExtra Source code
.wrapResult Source code
C.ptr Source code
ExposeAttribute Source code
ForeachBackend Man page
ForeachBackend,ANY-method Man page
ForeachBackend,NULL-method Man page
ForeachBackend,character-method Man page
ForeachBackend,cluster-method Man page
ForeachBackend,doMPI_backend-method Man page
ForeachBackend,doPSOCK_backend-method Man page
ForeachBackend,doParallelMC_backend-method Man page
ForeachBackend,doParallelSNOW_backend-method Man page
ForeachBackend,doParallel_backend-method Man page
ForeachBackend,missing-method Man page
ForeachBackend,mpicluster-method Man page
ForeachBackend,numeric-method Man page
ForeachBackend-methods Man page
Frobenius-nmf Man page
KL-nmf Man page
NMF Man page
NMF-class Man page
NMF-defunct Man page
NMF-deprecated Man page
NMF-package Man page
NMFList-class Man page
NMFOffset-class Man page
NMFSeed Man page
NMFSeed,NMFSeed-method Man page
NMFSeed,character-method Man page
NMFSeed-class Man page
NMFSeed-methods Man page
NMFStop Man page Source code
NMFStrategy Man page
NMFStrategy,NMFStrategy,missing-method Man page
NMFStrategy,NULL,NMFStrategy-method Man page
NMFStrategy,NULL,character-method Man page
NMFStrategy,character,NMFStrategy-method Man page
NMFStrategy,character,character-method Man page
NMFStrategy,character,function-method Man page
NMFStrategy,character,missing-method Man page
NMFStrategy,missing,character-method Man page
NMFStrategy-class Man page
NMFStrategy-methods Man page
NMFStrategyFunction-class Man page
NMFStrategyIterative-class Man page
NMFfit Man page Source code
NMFfit-class Man page
NMFfitX Man page
NMFfitX,NMFfit-method Man page
NMFfitX,NMFfitX-method Man page
NMFfitX,list-method Man page
NMFfitX-class Man page
NMFfitX-methods Man page
NMFfitX1-class Man page
NMFfitXn-class Man page
NMFns-class Man page
NMFstd-class Man page
R.CMD Source code
R.SHLIB Source code
R.exec Source code
R_std.divergence.update.h Source code
R_std.divergence.update.w Source code
R_std.euclidean.update.h Source code
R_std.euclidean.update.w Source code
SNMF/L-nmf Man page
SNMF/R-nmf Man page
Strategy-class Man page
Sys.getenv_value Source code
[,NMF-method Man page
adata Man page Source code
advanced-NMF Man page
aggregate.measure Source code
aheatmap Man page Source code
alength Man page Source code
algorithm Man page
algorithm,NMFList-method Man page
algorithm,NMFSeed-method Man page
algorithm,NMFStrategyFunction-method Man page
algorithm,NMFfit-method Man page
algorithm,NMFfitXn-method Man page
algorithm-methods Man page
algorithm<- Man page
algorithm<-,NMFSeed,function-method Man page
algorithm<-,NMFStrategyFunction,function-method Man page
algorithm<-,NMFfit,ANY-method Man page
algorithm<--methods Man page
algorithmic-NMF Man page
allFormals Source code
alphacol Source code
amargin Man page Source code
aname Source code
anames Man page Source code
annotationTrack Man page Source code
anyValue Source code
as.NMFList Source code
as.package_options Source code
as_package Source code
as_treedef Source code
atrack Man page Source code
atrack_code Source code
basis Man page
basis,ANY-method Man page
basis,NMF-method Man page
basis,NMFfitXn-method Man page
basis-methods Man page
basis<- Man page
basis<-,NMF-method Man page
basis<--methods Man page
basiscor Man page
basiscor,NMF,NMF-method Man page
basiscor,NMF,matrix-method Man page
basiscor,NMF,missing-method Man page
basiscor,matrix,NMF-method Man page
basiscor-methods Man page
basismap Man page
basismap,NMF-method Man page
basismap,NMFfitX-method Man page
basismap-methods Man page
basisnames Man page
basisnames,ANY-method Man page
basisnames-methods Man page
basisnames<- Man page
basisnames<-,ANY-method Man page
basisnames<--methods Man page
bioc-NMF Man page
brunet-nmf Man page
brunet_R-nmf Man page
bterms Man page Source code
bterms<- Man page
bterms<-,NMFstd-method Man page
bterms<--methods Man page
c,NMF-method Man page
c_gpar Source code
callInfo Source code
canFit Man page
canFit,NMFStrategy,NMF-method Man page
canFit,NMFStrategy,character-method Man page
canFit,character,ANY-method Man page
canFit-methods Man page
ccBreaks Man page Source code
ccPalette Man page Source code
ccRamp Man page Source code
ccSpec Man page Source code
checkErrors Man page Source code
checkMode_function Source code
chunkOutputHook Source code
cleanupCluster Source code
clone Source code
clone2 Source code
clone_regobj Source code
cluster_mat Man page Source code
cmp.cp Source code
coef Man page
coef,NMF-method Man page
coef,NMFfitXn-method Man page
coef-methods Man page
coef<- Man page
coef<-,NMF-method Man page
coef<--methods Man page
coefficients Man page
coefficients,NMF-method Man page
coefficients-methods Man page
coefmap Man page
coefmap,NMF-method Man page
coefmap,NMFfitX-method Man page
coefmap-methods Man page
colMax Source code
colMin Source code
compare Man page
compare,NMFfit-method Man page
compare,NMFfitXn-method Man page
compare,list-method Man page
compare-NMF Man page
compare-methods Man page
compile_src Source code
connectivity Man page
connectivity,ANY-method Man page
connectivity,NMF-method Man page
connectivity,factor-method Man page
connectivity,numeric-method Man page
connectivity-methods Man page
consensus Man page
consensus,NMF-method Man page
consensus,NMFfitX-method Man page
consensus,NMFfitX1-method Man page
consensus,NMFfitXn-method Man page
consensus-methods Man page
consensushc Man page
consensushc,NMF-method Man page
consensushc,NMFfitX-method Man page
consensushc,matrix-method Man page
consensushc-methods Man page
consensusmap Man page
consensusmap,NMF-method Man page
consensusmap,NMF.rank-method Man page
consensusmap,NMFfitX-method Man page
consensusmap,list-method Man page
consensusmap,matrix-method Man page
consensusmap-methods Man page
convert_annotations Source code
cophcor Man page
cophcor,NMFfitX-method Man page
cophcor,matrix-method Man page
cophcor-methods Man page
corplot Source code
cterms Man page Source code
cterms<- Man page
cterms<-,NMFstd-method Man page
cterms<--methods Man page
current.vpPath_patched Man page
cutdendro Man page Source code
cutheight Source code
d Source code
defaultArgument Source code
deviance Man page
deviance,NMF-method Man page
deviance,NMFStrategy-method Man page
deviance,NMFfit-method Man page
deviance,NMFfitX-method Man page
deviance-methods Man page
devnmf Source code
dim,NMF-method Man page
dim,NMFfitXn-method Man page
dim-NMF Man page
dimnames,NMF-method Man page
dimnames-NMF Man page
dimnames<-,NMF-method Man page
dispersion Man page
dispersion,NMFfitX-method Man page
dispersion,matrix-method Man page
dispersion-methods Man page
doBackendCleanup Source code
draw_annotation_legend Source code
draw_annotations Source code
draw_colnames Source code
draw_dendrogram Source code
draw_legend Source code
draw_matrix Source code
draw_rownames Source code
entropy Man page
entropy,ANY,ANY-method Man page
entropy,NMFfitXn,ANY-method Man page
entropy,factor,ANY-method Man page
entropy,table,missing-method Man page
entropy-methods Man page
esGolub Man page
evar Man page
evar,ANY-method Man page
evar-methods Man page
existsNMFMethod Man page Source code
existsNMFSeed Man page Source code
exitCheck Source code
expand_dots Source code
expand_list Source code
extractFeatures Man page
extractFeatures,NMF-method Man page
extractFeatures,matrix-method Man page
extractFeatures-methods Man page
extractLocalFun Source code
fcnnls Man page
fcnnls,ANY,numeric-method Man page
fcnnls,matrix,matrix-method Man page
fcnnls,numeric,matrix-method Man page
fcnnls-methods Man page
featureNames,NMF-method Man page
featureNames,NMFfitX-method Man page
featureNames<-,NMF-method Man page
featureScore Man page
featureScore,NMF-method Man page
featureScore,matrix-method Man page
featureScore-methods Man page
fit Man page
fit,NMFfit-method Man page
fit,NMFfitX-method Man page
fit,NMFfitX1-method Man page
fit,NMFfitXn-method Man page
fit-methods Man page
fit<- Man page
fit<-,NMFfit,NMF-method Man page
fit<--methods Man page
fitted Man page
fitted,NMF-method Man page
fitted,NMFOffset-method Man page
fitted,NMFfit-method Man page
fitted,NMFns-method Man page
fitted,NMFstd-method Man page
fitted-methods Man page
fixSweaveFigure Source code
fix_registry Source code
formatDoName Source code
fterms Source code
gVariable Man page Source code
generate_annotation_colours Source code
generate_breaks Source code
generate_dimnames Source code
getDoBackend Man page Source code
getDoBackendInfo Source code
getDoBackendName Source code
getDoParHosts Man page
getDoParHosts,ANY-method Man page
getDoParHosts-methods Man page
getDoParNHosts Man page Source code
getDoParallelInfo Source code
getDoParallelType Source code
getLoadingNamespace Source code
getMaxCores Source code
getNMFMethod Man page Source code
getNMFSeed Man page
getRNG1 Man page
getRNG1,NMFfitX-method Man page
getRNG1,NMFfitX1-method Man page
getRNG1,NMFfitXn-method Man page
getRNG1-methods Man page
gfile Man page Source code
grep_track Source code
grid.base.mix Source code
hasBasis Man page Source code
hasCoef Man page Source code
hasNames Source code
hasTrack Man page Source code
hash_function Source code
heatmap-NMF Man page
heatmap_motor Source code
hook_try Source code
hostfile Man page Source code
ibasis Man page Source code
ibterms Man page
ibterms,NMF-method Man page
ibterms,NMFfit-method Man page
ibterms,NMFfitX-method Man page
ibterms,NMFstd-method Man page
ibterms-methods Man page
icoef Man page Source code
icterms Man page
icterms,NMF-method Man page
icterms,NMFfit-method Man page
icterms,NMFstd-method Man page
icterms-methods Man page
initialize,NMFOffset-method Man page
is.Mac Source code
is.atrack Man page Source code
is.backend Source code
is.dir Source code
is.doSEQ Source code
is.empty.nmf Man page Source code
is.eset Source code
is.file Source code
is.mixed Man page Source code
is.nmf Man page Source code
is.package_options Source code
is.partial.nmf Man page Source code
is.same Source code
isCHECK Man page Source code
isCRANcheck Man page Source code
isDevNamespace Source code
isInteger Source code
isLoadingNamespace Source code
isLogical Source code
isMPIBackend Source code
isManualVignette Source code
isNMFclass Source code
isNMFfit Man page Source code
isNamespaceLoaded Source code
isNumber Source code
isRNGseed Source code
isReal Source code
isString Source code
isSweave Source code
is_NA Source code
is_funcall Source code
is_option_symlink Source code
is_pkgcall Source code
is_track_code Source code
is_treedef Source code
iterms Man page Source code
latex_bibliography Man page Source code
latex_preamble Man page Source code
lee-nmf Man page
lee_R-nmf Man page
lmessage Source code
loadings,NMF-method Man page
logs Man page
logs,ANY-method Man page
logs-methods Man page
lsNMF-nmf Man page
lverbose Man page
matapply Source code
match.basis Source code
match_atrack Man page Source code
match_atrack_code Source code
match_named_track Source code
metaHeatmap Man page
metaHeatmap,NMF-method Man page
metaHeatmap,NMFfitX-method Man page
metaHeatmap,matrix-method Man page
metaHeatmap-methods Man page
metagenes Man page
metagenes<- Man page
metaprofiles Man page
metaprofiles<- Man page
methods-NMF Man page
minfit Man page
minfit,NMFfit-method Man page
minfit,NMFfitX-method Man page
minfit,NMFfitX1-method Man page
minfit,NMFfitXn-method Man page
minfit-methods Man page
misc Man page Source code
mkoptions Source code
modelname Man page
modelname,ANY-method Man page
modelname,NMFStrategy-method Man page
modelname,NMFfit-method Man page
modelname,NMFfitXn-method Man page
modelname-methods Man page
more Source code
name Man page
name,Strategy-method Man page
name-methods Man page
name<- Man page
name<-,Strategy,character-method Man page
name<--methods Man page
nbasis Man page
nbasis,ANY-method Man page
nbasis,NMFfitXn-method Man page
nbasis-methods Man page
nbterms Man page Source code
ncterms Man page Source code
neq.constraints.inplace Man page Source code
new_logger Source code
new_loggerNULL Source code
new_loggerSTDERR Source code
new_loggerSTDOUT Source code
niter Man page
niter,NMFfit-method Man page
niter-methods Man page
niter<- Man page
niter<-,NMFfit,numeric-method Man page
niter<--methods Man page
nmeta Man page
nmf Man page
nmf,ExpressionSet,ANY,ANY-method Man page
nmf,data.frame,ANY,ANY-method Man page
nmf,formula,ANY,ANY-method Man page
nmf,matrix,ExpressionSet,ANY-method Man page
nmf,matrix,NMF,ANY-method Man page
nmf,matrix,NULL,ANY-method Man page
nmf,matrix,data.frame,ANY-method Man page
nmf,matrix,matrix,ANY-method Man page
nmf,matrix,missing,ANY-method Man page
nmf,matrix,numeric,NMFStrategy-method Man page
nmf,matrix,numeric,NULL-method Man page
nmf,matrix,numeric,character-method Man page
nmf,matrix,numeric,function-method Man page
nmf,matrix,numeric,list-method Man page
nmf,matrix,numeric,missing-method Man page
nmf-methods Man page
nmf.debug Source code
nmf.equal Man page
nmf.equal,NMF,NMF-method Man page
nmf.equal,NMF,NMFfit-method Man page
nmf.equal,NMF,NMFfitX-method Man page
nmf.equal,NMFfit,NMF-method Man page
nmf.equal,NMFfit,NMFfit-method Man page
nmf.equal,NMFfitX,NMF-method Man page
nmf.equal,NMFfitX1,NMFfitX1-method Man page
nmf.equal,list,list-method Man page
nmf.equal,list,missing-method Man page
nmf.equal-methods Man page
nmf.getOption Man page
nmf.options Man page
nmf.printOptions Man page
nmf.resetOptions Man page
nmf.stop.connectivity Man page
nmf.stop.iteration Man page Source code
nmf.stop.stationary Man page
nmf.stop.threshold Man page Source code
nmfAlgorithm Man page Source code
nmfAlgorithm.Frobenius Man page
nmfAlgorithm.KL Man page
nmfAlgorithm.SNMF_L Man page
nmfAlgorithm.SNMF_R Man page
nmfAlgorithm.brunet Man page
nmfAlgorithm.brunet_R Man page
nmfAlgorithm.lee Man page
nmfAlgorithm.lee_R Man page
nmfAlgorithm.lsNMF Man page
nmfAlgorithm.nsNMF Man page
nmfAlgorithm.nsNMF_R Man page
nmfAlgorithm.offset Man page
nmfAlgorithm.offset_R Man page
nmfAlgorithmInfo Source code
nmfApply Man page Source code
nmfArgs Man page Source code
nmfCheck Man page Source code
nmfDistance Man page Source code
nmfEstimateRank Man page Source code
nmfFormals Man page Source code
nmfFormals.NMFStrategy Source code
nmfFormals.NMFStrategyFunction Source code
nmfFormals.NMFStrategyIterative Source code
nmfFormals.character Source code
nmfGet Source code
nmfInfo Source code
nmfModel Man page
nmfModel,ANY,ExpressionSet-method Man page
nmfModel,ExpressionSet,ANY-method Man page
nmfModel,NULL,ANY-method Man page
nmfModel,data.frame,data.frame-method Man page
nmfModel,formula,ANY-method Man page
nmfModel,matrix,ANY-method Man page
nmfModel,matrix,matrix-method Man page
nmfModel,missing,ANY-method Man page
nmfModel,missing,missing-method Man page
nmfModel,numeric,matrix-method Man page
nmfModel,numeric,missing-method Man page
nmfModel,numeric,numeric-method Man page
nmfModel-methods Man page
nmfModels Man page Source code
nmfObject Man page Source code
nmfRegisterAlgorithm Man page
nmfRegistry Source code
nmfReport Man page Source code
nmfSeed Man page Source code
nmfSeedInfo Source code
nmfWrapper Man page Source code
nmf_snmf Source code
nmf_stop Source code
nmf_update.KL Man page
nmf_update.KL.h Man page
nmf_update.KL.h_R Man page
nmf_update.KL.w Man page
nmf_update.KL.w_R Man page
nmf_update.brunet Man page Source code
nmf_update.brunet_R Man page Source code
nmf_update.euclidean Man page
nmf_update.euclidean.h Man page
nmf_update.euclidean.h_R Man page
nmf_update.euclidean.w Man page
nmf_update.euclidean.w_R Man page
nmf_update.euclidean_offset.h Man page Source code
nmf_update.euclidean_offset.w Man page Source code
nmf_update.lee Man page Source code
nmf_update.lee_R Man page Source code
nmf_update.lnmf Source code
nmf_update.lsnmf Man page Source code
nmf_update.ns Man page Source code
nmf_update.ns_R Man page Source code
nmf_update.offset Man page Source code
nmf_update.offset_R Man page Source code
nmf_update.penmf Source code
nmf_update_R.lnmf Source code
nmf_warning Source code
nneg Man page
nneg,ExpressionSet-method Man page
nneg,NMF-method Man page
nneg,matrix-method Man page
nneg-methods Man page
nrun Man page
nrun,ANY-method Man page
nrun,NMFfit-method Man page
nrun,NMFfitX-method Man page
nrun,NMFfitX1-method Man page
nrun,NMFfitXn-method Man page
nrun-methods Man page
nsNMF_R-nmf Man page
ns_get Source code
nterms Man page Source code
objective Man page
objective,NMFStrategy-method Man page
objective,NMFfit-method Man page
objective-methods Man page
objective<- Man page
objective<-,NMFStrategy,character-method Man page
objective<-,NMFStrategy,function-method Man page
objective<-,NMFfit,ANY-method Man page
objective<--methods Man page
offset,NMFOffset-method Man page
offset,NMFfit-method Man page
offset_R-nmf Man page
oneoffVariable Source code
option_symlink Source code
option_symlink_target Source code
options-NMF Man page
orderVersion Source code
packageEnv Source code
packageExtra Source code
packageExtraHandler Source code
packageExtraRunner Source code
packageName Source code
packagePath Source code
packageReferenceFile Source code
packageRegistries Source code
packageRegistry Source code
packageTestEnv Source code
pal Source code
parallel-NMF Man page
parsePackageCitation Source code
parse_formula Man page Source code
penmf.objective Source code
pkg_calls Source code
pkgreg_fetch Source code
pkgreg_remove Source code
plot,NMFList,missing-method Man page
plot,NMFfit,missing-method Man page
plot.NMF.consensus Man page Source code
plot.NMF.rank Man page Source code
pmax.inplace Man page Source code
posICA Source code
posneg Man page Source code
predict Man page
predict,NMF-method Man page
predict,NMFfitX-method Man page
predict-methods Man page
print.fcnnls Source code
print.foreach_backend Source code
process_tracks Source code
profcor Man page
profcor,NMF,NMF-method Man page
profcor,NMF,matrix-method Man page
profcor,NMF,missing-method Man page
profcor,matrix,NMF-method Man page
profcor-methods Man page
profplot Man page
profplot.default Man page
purity Man page
purity,ANY,ANY-method Man page
purity,NMFfitXn,ANY-method Man page
purity,factor,ANY-method Man page
purity,table,missing-method Man page
purity-methods Man page
quick_str Source code
randomize Man page Source code
regfetch Source code Source code
register Man page Source code
register.doMPI_backend Source code
register.doParallel_backend Source code
register.foreach_backend Source code
registerDoBackend Man page Source code
registryContributors Source code
regkeys Source code
removeNMFMethod Man page Source code
removeNMFSeed Man page Source code
renderAnnotations Source code
require.quiet Source code
residuals Man page
residuals,NMFfit-method Man page
residuals,NMFfitX-method Man page
residuals-methods Man page
residuals<- Man page
residuals<-,NMFfit-method Man page
residuals<--methods Man page
rev.aheatmap_treedef Source code
revPalette Man page Source code
rmAttributes Source code
rmatrix Man page
rmatrix,ANY-method Man page
rmatrix,NMF-method Man page
rmatrix,numeric-method Man page
rmatrix-methods Man page
rnmf Man page
rnmf,ANY,ExpressionSet-method Man page
rnmf,ANY,data.frame-method Man page
rnmf,ANY,matrix-method Man page
rnmf,NMF,missing-method Man page
rnmf,NMF,numeric-method Man page
rnmf,NMFOffset,numeric-method Man page
rnmf,formula,ANY-method Man page
rnmf,missing,missing-method Man page
rnmf,numeric,missing-method Man page
rnmf,numeric,numeric-method Man page
rnmf-methods Man page
round.pretty Source code
rposneg Man page
rposneg,ExpressionSet-method Man page
rposneg,NMF-method Man page
rposneg,matrix-method Man page
rposneg-methods Man page
rss Man page
rss,ANY-method Man page
rss,matrix-method Man page
rss-methods Man page
run Man page
run,NMFStrategy,ExpressionSet,ANY-method Man page
run,NMFStrategy,matrix,NMF-method Man page
run,NMFStrategy,matrix,NMFfit-method Man page
run,NMFStrategyFunction,matrix,NMFfit-method Man page
run,NMFStrategyIterative,matrix,NMFfit-method Man page
run,NMFStrategyIterativeX,matrix,NMFfit-method Man page
run,NMFStrategyOctave,matrix,NMFfit-method Man page
run-methods Man page
runit.lsnmf Source code
runtime Man page
runtime,NMFList-method Man page
runtime,NMFfit-method Man page
runtime-methods Man page
runtime.all Man page
runtime.all,NMFfit-method Man page
runtime.all,NMFfitX-method Man page
runtime.all,NMFfitXn-method Man page
runtime.all-methods Man page
sVariable Source code
sampleNames,NMF-method Man page
sampleNames,NMFfitX-method Man page
sampleNames<-,NMF,ANY-method Man page
scale.NMF Man page Source code
scale_colours Source code
scale_mat Source code
scale_vec_colours Source code
scoef Man page
scoef,NMF-method Man page
scoef,matrix-method Man page
scoef-methods Man page
seed Man page
seed,ANY,ANY,NULL-method Man page
seed,ANY,ANY,character-method Man page
seed,ANY,ANY,function-method Man page
seed,ANY,ANY,missing-method Man page
seed,ANY,ANY,numeric-method Man page
seed,ANY,list,NMFSeed-method Man page
seed,ANY,numeric,NMFSeed-method Man page
seed,ExpressionSet,ANY,ANY-method Man page
seed,matrix,NMF,NMFSeed-method Man page
seed-methods Man page
seeding Man page
seeding,NMFfit-method Man page
seeding,NMFfitXn-method Man page
seeding-methods Man page
seeding<- Man page
seeding<-,NMFfit-method Man page
seeding<--methods Man page
selectNMFMethod Man page Source code
seqtime Man page
seqtime,NMFList-method Man page
seqtime,NMFfitXn-method Man page
seqtime-methods Man page
setBackendCleanup Source code
setDoBackend Man page Source code
setNMFMethod Man page Source code
setNMFSeed Man page Source code
setPackageExtra Source code
setPackageExtraHandler Source code
setPackageRegistry Source code
setPackageRegistryEntry Source code
set_libPaths Source code
setupBackend Man page Source code
setupLibPaths Man page Source code
setupPackageOptions Source code
setupRNG Man page Source code
setupSharedMemory Man page Source code
setupTempDirectory Man page Source code
show,NMF-method Man page
show,NMFList-method Man page
show,NMFOffset-method Man page
show,NMFSeed-method Man page
show,NMFStrategy-method Man page
show,NMFStrategyIterative-method Man page
show,NMFfit-method Man page
show,NMFfitX-method Man page
show,NMFfitX1-method Man page
show,NMFfitXn-method Man page
show,NMFns-method Man page
siNMF Source code
siNMF_R Source code
silhouette.NMF Man page
smoothing Man page Source code
snmf.objective Source code
sparseness Man page
sparseness,NMF-method Man page
sparseness,matrix-method Man page
sparseness,numeric-method Man page
sparseness-methods Man page
staticVar Man page
std.divergence.update.h Source code
std.divergence.update.w Source code
std.euclidean.update.h Source code
std.euclidean.update.w Source code
stop-NMF Man page
str_args Man page Source code
str_desc Source code
str_dim Source code
str_fun Source code
str_match Source code
str_ns Source code
str_out Source code
subset2orginal_idx Source code
subset_index Source code
sum2one Source code
summary Man page
summary,NMF-method Man page
summary,NMFList-method Man page
summary,NMFfit-method Man page
summary,NMFfitX-method Man page
summary-NMF Man page
summary-methods Man page
summary.NMF.rank Source code
sweaveFile Source code
sweaveLabel Source code
syntheticNMF Man page Source code
t.NMF Man page Source code
t.NMFstd Source code
test.match_atrack Source code
toNumeric Source code
topns Source code
topns_name Source code
trackError Man page Source code
tryViewport Man page Source code
try_message Source code
ts_eval Man page Source code
ts_tempfile Man page Source code
tsvd Source code
txtProgressBar Man page
unit.test Source code
utils-NMF Man page
vmessage Source code
wheel Source code
which.best Man page Source code
write.pkgbib Source code
wrss Man page Source code
xifyStrategy Source code
NMF documentation built on March 31, 2023, 6:55 p.m.

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