nmfApply  R Documentation 
The function nmfApply
provides exteneded
apply
like functionality for objects of class
NMF
. It enables to easily apply a function over
different margins of NMF models.
nmfApply(X, MARGIN, FUN, ..., simplify = TRUE,
USE.NAMES = TRUE)
X 
an object that has suitable 
MARGIN 
a single numeric (integer) value that
specifies over which margin(s) the function 
FUN 
a function to apply over the specified margins. 
... 
extra arguments passed to 
simplify 
a logical only used when 
USE.NAMES 
a logical only used when

The function FUN
is applied via a call to
apply
or sapply
according to
the value of argument MARGIN
as follows:
apply FUN
to each
row of the basis matrix: apply(basis(X), 1L,
FUN, ...)
.
apply FUN
to each column
of the coefficient matrix: apply(coef(X), 2L, FUN,
...)
.
apply FUN
to each pair of
associated basis component and basis profile: more or
less sapply(seq(nbasis(X)), function(i, ...)
FUN(basis(X)[,i], coef(X)[i, ], ...), ...)
.
In this case FUN
must be have at least two
arguments, to which are passed each basis components and
basis profiles respectively – as numeric vectors.
apply FUN
to each column
of the basis matrix, i.e. to each basis component:
apply(basis(X), 2L, FUN, ...)
.
apply FUN
to each row of
the coefficient matrix: apply(coef(X), 1L, FUN,
...)
.
a vector or a list. See apply
and
sapply
for more details on the output
format.
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