Description Usage Arguments Value Methods
The function consensushc
computes the hierarchical
clustering of a consensus matrix, using the matrix itself
as a similarity matrix and average linkage. It is
1 2 3 4 5 6 7 8 9  consensushc(object, ...)
## S4 method for signature 'matrix'
consensushc(object,
method = "average", dendrogram = TRUE)
## S4 method for signature 'NMFfitX'
consensushc(object,
what = c("consensus", "fit"), ...)

object 
a matrix or an 
... 
extra arguments passed to next method calls 
method 
linkage method passed to

dendrogram 
a logical that specifies if the result
of the hierarchical clustering (en 
what 
character string that indicates which matrix to use in the computation. 
an object of class dendrogram
or hclust
depending on the value of argument dendrogram
.
signature(object = "matrix")
:
Workhorse method for matrices.
signature(object = "NMF")
:
Compute the hierarchical clustering on the connectivity
matrix of object
.
signature(object = "NMFfitX")
:
Compute the hierarchical clustering on the consensus
matrix of object
, or on the connectivity matrix of
the best fit in object
.
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