Man pages for PatientProfiles
Identify Characteristics of Patients in the OMOP Common Data Model
| addAge | Compute the age of the individuals at a certain date |
| addAgeQuery | Query to add the age of the individuals at a certain date |
| addBirthday | Add the birth day of an individual to a table |
| addBirthdayQuery | Add the birth day of an individual to a table |
| addCategories | Categorize a numeric variable |
| addCdmName | Add cdm name |
| addCohortEventDate | Add the first or last cohort event and its date |
| addCohortEventDays | Add the first or last cohort event and its relative days |
| addCohortIntersectCount | It creates columns to indicate number of occurrences of... |
| addCohortIntersectDate | Date of cohorts that are present in a certain window |
| addCohortIntersectDays | It creates columns to indicate the number of days between the... |
| addCohortIntersectField | It creates a column with the field of a desired intersection |
| addCohortIntersectFlag | It creates columns to indicate the presence of cohorts |
| addCohortName | Add cohort name for each cohort_definition_id |
| addConceptEventDate | Add the first or last concept event and its date |
| addConceptEventDays | Add the first or last concept event and its relative days |
| addConceptIntersectCount | It creates column to indicate the count overlap information... |
| addConceptIntersectDate | It creates column to indicate the date overlap information... |
| addConceptIntersectDays | It creates column to indicate the days of difference from an... |
| addConceptIntersectField | It adds a custom column (field) from the intersection with a... |
| addConceptIntersectFlag | It creates column to indicate the flag overlap information... |
| addConceptName | Add concept name for each concept_id |
| addDateOfBirth | Add a column with the individual birth date |
| addDateOfBirthQuery | Query to add a column with the individual birth date |
| addDeathDate | Add date of death for individuals. Only death within the same... |
| addDeathDays | Add days to death for individuals. Only death within the same... |
| addDeathFlag | Add flag for death for individuals. Only death within the... |
| addDemographics | Compute demographic characteristics at a certain date |
| addDemographicsQuery | Query to add demographic characteristics at a certain date |
| addFutureObservation | Compute the number of days till the end of the observation... |
| addFutureObservationQuery | Query to add the number of days till the end of the... |
| addInObservation | Indicate if a certain record is within the observation period |
| addInObservationQuery | Query to add a new column to indicate if a certain record is... |
| addObservationPeriodId | Add the ordinal number of the observation period associated... |
| addObservationPeriodIdQuery | Add the ordinal number of the observation period associated... |
| addPriorObservation | Compute the number of days of prior observation in the... |
| addPriorObservationQuery | Query to add the number of days of prior observation in the... |
| addSex | Compute the sex of the individuals |
| addSexQuery | Query to add the sex of the individuals |
| addTableIntersectCount | Compute number of intersect with an omop table. |
| addTableIntersectDate | Compute date of intersect with an omop table. |
| addTableIntersectDays | Compute time to intersect with an omop table. |
| addTableIntersectField | Intersecting the cohort with columns of an OMOP table of... |
| addTableIntersectFlag | Compute a flag intersect with an omop table |
| ageDoc | Helper for consistent documentation of 'age'. |
| ageGroupDoc | Helper for consistent documentation of 'ageGroup'. |
| ageImposeDayDoc | Helper for consistent documentation of 'ageImposeDay'. |
| ageImposeMonthDoc | Helper for consistent documentation of 'ageImposeMonth'. |
| ageMissingDayDoc | Helper for consistent documentation of 'ageMissingDay'. |
| ageMissingMonthDoc | Helper for consistent documentation of 'ageMissingMonth'. |
| ageNameDoc | Helper for consistent documentation of 'ageName'. |
| ageUnitDoc | Helper for consistent documentation of 'ageUnit'. |
| allowDuplicatesDoc | Helper for consistent documentation of 'allowDuplicates'. |
| availableEstimates | Show the available estimates that can be used for the... |
| benchmarkPatientProfiles | Benchmark intersections and demographics functions for a... |
| birthdayDoc | Helper for consistent documentation of 'birthday'. |
| birthdayNameDoc | Helper for consistent documentation of 'birthdayName'. |
| cdmDoc | Helper for consistent documentation of 'cdm'. |
| censorDateDoc | Helper for consistent documentation of 'censorDate'. |
| cohortDoc | Helper for consistent documentation of 'cohort'. |
| completeIntervalDoc | Helper for consistent documentation of 'completeInterval'. |
| conceptSetDoc | Helper for consistent documentation of 'conceptSet'. |
| dateOfBirthDoc | Helper for consistent documentation of 'dateOfBirth'. |
| dateOfBirthNameDoc | Helper for consistent documentation of 'dateOfBirthName'. |
| endDateColumn | Get the name of the end date column for a certain table in... |
| fieldDoc | Helper for consistent documentation of 'field'. |
| filterCohortId | Filter a cohort according to cohort_definition_id column, the... |
| filterInObservation | Filter the rows of a 'cdm_table' to the ones in observation... |
| futureObservationDoc | Helper for consistent documentation of 'futureObservation'. |
| futureObservationNameDoc | Helper for consistent documentation of... |
| futureObservationTypeDoc | Helper for consistent documentation of... |
| imposeDayDoc | Helper for consistent documentation of 'imposeDay'. |
| imposeMonthDoc | Helper for consistent documentation of 'imposeMonth'. |
| indexDateDoc | Helper for consistent documentation of 'indexDate'. |
| inObservationDoc | Helper for consistent documentation of 'inObservation'. |
| missingAgeGroupValueDoc | Helper for consistent documentation of... |
| missingDayDoc | Helper for consistent documentation of 'missingDay'. |
| missingMonthDoc | Helper for consistent documentation of 'missingMonth'. |
| missingSexValueDoc | Helper for consistent documentation of 'missingSexValue'. |
| mockDisconnect | Deprecated |
| mockPatientProfiles | It creates a mock database for testing PatientProfiles... |
| multipleEventsDoc | Helper for consistent documentation of 'multipleEvents'. |
| nameDoc | Helper for consistent documentation of 'name'. |
| nameObservationPeriodIdDoc | Helper for consistent documentation of... |
| nameStyleDoc | Helper for consistent documentation of 'nameStyle'. |
| nameStyleEventDoc | Helper for event-specific documentation of 'nameStyle'. |
| orderDoc | Helper for consistent documentation of 'order'. |
| PatientProfiles-package | PatientProfiles: Identify Characteristics of Patients in the... |
| priorObservationDoc | Helper for consistent documentation of 'priorObservation'. |
| priorObservationNameDoc | Helper for consistent documentation of... |
| priorObservationTypeDoc | Helper for consistent documentation of... |
| reexports | Objects exported from other packages |
| sexDoc | Helper for consistent documentation of 'sex'. |
| sexNameDoc | Helper for consistent documentation of 'sexName'. |
| sourceConceptIdColumn | Get the name of the source concept_id column for a certain... |
| standardConceptIdColumn | Get the name of the standard concept_id column for a certain... |
| startDateColumn | Get the name of the start date column for a certain table in... |
| summariseResult | Summarise variables using a set of estimate functions. The... |
| tableDoc | Helper for consistent documentation of 'table'. |
| tableNameDoc | Helper for consistent documentation of 'tableName'. |
| targetCohortIdDoc | Helper for consistent documentation of 'targetCohortId'. |
| targetCohortTableDoc | Helper for consistent documentation of 'targetCohortTable'. |
| targetDateDoc | Helper for consistent documentation of 'targetDate'. |
| targetEndDateDoc | Helper for consistent documentation of 'targetEndDate'. |
| targetStartDateDoc | Helper for consistent documentation of 'targetStartDate'. |
| typeDoc | Helper for consistent documentation of 'type'. |
| variableTypes | Classify the variables between 5 types: "numeric",... |
| windowDoc | Helper for consistent documentation of 'window'. |
| xDoc | Helper for consistent documentation of 'x'. |
