addConceptName: Add concept name for each concept_id

In PatientProfiles: Identify Characteristics of Patients in the OMOP Common Data Model

Add concept name for each concept_id

Description

Add concept name for each concept_id

Usage

addConceptName(table, column = NULL, nameStyle = "{column}_name")

Arguments

table	cdm_table that contains column.
column	Column to add the concept names from. If NULL any column that its name ends with 'concept_id' will be used.
nameStyle	Name of the new column.

Value

table with an extra column with the concept names.

Examples

library(PatientProfiles)
library(duckdb)
library(CDMConnector)
library(dplyr, warn.conflicts = FALSE)

dbName <- "GiBleed"
requireEunomia(datasetName = dbName)
con <- dbConnect(drv = duckdb(dbdir = eunomiaDir(datasetName = dbName)))
cdm <- cdmFromCon(con = con, cdmSchema = "main", writeSchema = "main")

cdm$drug_exposure |>
  addConceptName(column = "drug_concept_id", nameStyle = "drug_name") |>
  glimpse()

cdm$drug_exposure |>
  addConceptName() |>
  glimpse()

PatientProfiles documentation built on June 28, 2025, 1:09 a.m.