addInObservationQuery: Query to add a new column to indicate if a certain record is...

In PatientProfiles: Identify Characteristics of Patients in the OMOP Common Data Model

Query to add a new column to indicate if a certain record is within the observation period

Description

Same as addInObservation(), except query is not computed to a table.

Usage

addInObservationQuery(
  x,
  indexDate = "cohort_start_date",
  window = c(0, 0),
  completeInterval = FALSE,
  nameStyle = "in_observation",
  type = "numeric"
)

Arguments

x	A table containing individuals in a CDM reference.
indexDate	Name of a date column in x, or a single date to use for all rows, used as the reference date.
window	Window or windows of time relative to indexDate to consider.
completeInterval	If TRUE, individuals must be observed for the full requested interval.
nameStyle	Naming pattern for the added column or columns. It should include the required formatting variables. If more than one tableName is provided, it must include {table_name}.
type	Type of the created column(s). Counts, days, age, and observation durations can be "numeric" or "integer". Flag columns can also be "logical". Field columns can use "auto" to preserve the source type, or can be converted to "numeric", "integer", "logical", or "character".

Value

Cohort table with an added column assessing observation. Values are 1/TRUE in observation and 0/FALSE otherwise, according to type.

Examples

library(PatientProfiles)

cdm <- mockPatientProfiles(source = "duckdb")

cdm$cohort1 |>
  addInObservationQuery()

PatientProfiles documentation built on Aug. 22, 2026, 1:07 a.m.