addCohortIntersectFlag: It creates columns to indicate the presence of cohorts

In PatientProfiles: Identify Characteristics of Patients in the OMOP Common Data Model

It creates columns to indicate the presence of cohorts

Description

It creates columns to indicate the presence of cohorts

Usage

addCohortIntersectFlag(
  x,
  targetCohortTable,
  targetCohortId = NULL,
  indexDate = "cohort_start_date",
  censorDate = NULL,
  targetStartDate = "cohort_start_date",
  targetEndDate = "cohort_end_date",
  window = list(c(0, Inf)),
  nameStyle = "{cohort_name}_{window_name}",
  name = NULL
)

Arguments

x	Table with individuals in the cdm.
targetCohortTable	name of the cohort that we want to check for overlap.
targetCohortId	vector of cohort definition ids to include.
indexDate	Variable in x that contains the date to compute the intersection.
censorDate	whether to censor overlap events at a specific date or a column date of x.
targetStartDate	date of reference in cohort table, either for start (in overlap) or on its own (for incidence).
targetEndDate	date of reference in cohort table, either for end (overlap) or NULL (if incidence).
window	window to consider events of.
nameStyle	naming of the added column or columns, should include required parameters.
name	Name of the new table, if NULL a temporary table is returned.

Value

table with added columns with overlap information.

Examples

cdm <- mockPatientProfiles()

cdm$cohort1 %>%
  addCohortIntersectFlag(
    targetCohortTable = "cohort2"
  )
mockDisconnect(cdm = cdm)

PatientProfiles documentation built on Oct. 30, 2024, 9:13 a.m.