addCohortIntersectDate: Date of cohorts that are present in a certain window

In PatientProfiles: Identify Characteristics of Patients in the OMOP Common Data Model

Date of cohorts that are present in a certain window

Description

Date of cohorts that are present in a certain window

Usage

addCohortIntersectDate(
  x,
  targetCohortTable,
  targetCohortId = NULL,
  indexDate = "cohort_start_date",
  censorDate = NULL,
  targetDate = "cohort_start_date",
  order = "first",
  window = c(0, Inf),
  nameStyle = "{cohort_name}_{window_name}",
  name = NULL
)

Arguments

x	Table with individuals in the cdm.
targetCohortTable	Cohort table to.
targetCohortId	Cohort IDs of interest from the other cohort table. If NULL, all cohorts will be used with a time variable added for each cohort of interest.
indexDate	Variable in x that contains the date to compute the intersection.
censorDate	whether to censor overlap events at a specific date or a column date of x.
targetDate	Date of interest in the other cohort table. Either cohort_start_date or cohort_end_date.
order	date to use if there are multiple records for an individual during the window of interest. Either first or last.
window	Window of time to identify records relative to the indexDate. Records outside of this time period will be ignored.
nameStyle	naming of the added column or columns, should include required parameters.
name	Name of the new table, if NULL a temporary table is returned.

Value

x along with additional columns for each cohort of interest.

Examples

cdm <- mockPatientProfiles()

cdm$cohort1 %>%
  addCohortIntersectDate(
    targetCohortTable = "cohort2"
  )
mockDisconnect(cdm = cdm)

PatientProfiles documentation built on Oct. 30, 2024, 9:13 a.m.