addCohortIntersectDate: Date of cohorts that are present in a certain window

In PatientProfiles: Identify Characteristics of Patients in the OMOP Common Data Model

Date of cohorts that are present in a certain window

Description

Date of cohorts that are present in a certain window

Usage

addCohortIntersectDate(
  x,
  targetCohortTable,
  targetCohortId = NULL,
  indexDate = "cohort_start_date",
  censorDate = NULL,
  targetDate = "cohort_start_date",
  order = "first",
  window = c(0, Inf),
  nameStyle = "{cohort_name}_{window_name}",
  name = NULL
)

Arguments

x	A table containing individuals in a CDM reference.
targetCohortTable	Name of the cohort table to intersect with.
targetCohortId	Cohort definition IDs to include from targetCohortTable. If NULL, all cohorts are included.
indexDate	Name of a date column in x, or a single date to use for all rows, used as the reference date.
censorDate	Date or name of a date column in x on which to censor follow-up. If NULL, no censoring is applied.
targetDate	Name or names of date columns in the target tables to use for the intersection.
order	Which record to use when multiple records occur in a window: "first" or "last".
window	Window or windows of time relative to indexDate to consider.
nameStyle	Naming pattern for the added column or columns. It should include the required formatting variables. If more than one tableName is provided, it must include {table_name}.
name	Name of the new table. If NULL, a temporary table is returned.

Value

x along with additional columns for each cohort of interest.

Examples

library(PatientProfiles)

cdm <- mockPatientProfiles(source = "duckdb")

cdm$cohort1 |>
  addCohortIntersectDate(targetCohortTable = "cohort2")

PatientProfiles documentation built on Aug. 22, 2026, 1:07 a.m.