addTableIntersectFlag: Compute a flag intersect with an omop table.

In PatientProfiles: Identify Characteristics of Patients in the OMOP Common Data Model

Compute a flag intersect with an omop table.

Description

Compute a flag intersect with an omop table.

Usage

addTableIntersectFlag(
  x,
  tableName,
  indexDate = "cohort_start_date",
  censorDate = NULL,
  window = list(c(0, Inf)),
  targetStartDate = startDateColumn(tableName),
  targetEndDate = endDateColumn(tableName),
  nameStyle = "{table_name}_{window_name}",
  name = NULL
)

Arguments

x	Table with individuals in the cdm.
tableName	Name of the table to intersect with. Options: visit_occurrence, condition_occurrence, drug_exposure, procedure_occurrence, device_exposure, measurement, observation, drug_era, condition_era, specimen, episode.
indexDate	Variable in x that contains the date to compute the intersection.
censorDate	whether to censor overlap events at a specific date or a column date of x.
window	window to consider events in.
targetStartDate	Column name with start date for comparison.
targetEndDate	Column name with end date for comparison.
nameStyle	naming of the added column or columns, should include required parameters.
name	Name of the new table, if NULL a temporary table is returned.

Value

table with added columns with intersect information.

Examples

cdm <- mockPatientProfiles()

cdm$cohort1 %>%
  addTableIntersectFlag(tableName = "visit_occurrence")
mockDisconnect(cdm = cdm)

PatientProfiles documentation built on Oct. 30, 2024, 9:13 a.m.