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ProActive: Detect Elevations and Gaps in Mapped Sequencing Read Coverage
Automate the detection of gaps and elevations in mapped sequencing read coverage using a 2D pattern-matching algorithm. 'ProActive' detects, characterizes and visualizes read coverage patterns in both genomes and metagenomes. Optionally, users may provide gene annotations associated with their genome or metagenome in the form of a .gff file. In this case, 'ProActive' will generate an additional output table containing the gene annotations found within the detected regions of gapped and elevated read coverage. Additionally, users can search for gene annotations of interest in the output read coverage plots.
Getting started
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Package details |
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| Author | Jessie Maier [aut, cre, cph] (<https://orcid.org/0009-0001-8575-5386>), Manuel Kleiner [aut, ths] (<https://orcid.org/0000-0001-6904-0287>) |
| Maintainer | Jessie Maier <jlmaier@ncsu.edu> |
| License | GPL-2 |
| Version | 0.1.0 |
| URL | https://github.com/jlmaier12/ProActive https://jlmaier12.github.io/ProActive/ |
| Package repository | View on CRAN |
| Installation |
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