plotProActiveResults: Plot results of 'ProActive()' pattern-matching

In ProActive: Detect Elevations and Gaps in Mapped Sequencing Read Coverage

Plot results of 'ProActive()' pattern-matching

Description

Plot read coverage of contigs/chunks with detected gaps and elevations and their associated pattern-match.

Usage

plotProActiveResults(pileup, ProActiveResults, elevFilter, saveFilesTo)

Arguments

pileup	A .txt file containing mapped sequencing read coverages averaged over 100 bp windows/bins.
ProActiveResults	The output from 'ProActive()'.
elevFilter	Optional, only plot results with pattern-matches that achieved an elevation ratio (max/min) greater than the specified values. Default is no filter.
saveFilesTo	Optional, Provide a path to the directory you wish to save output to. A folder will be made within the provided directory to store results.

Value

A list containing ggplot objects

Examples

ProActivePlots <- plotProActiveResults(sampleMetagenomePileup,
                                       sampleMetagenomeResults)

ProActive documentation built on April 4, 2025, 12:58 a.m.