pileupFormatter: Reformat input pileup file
In ProActive: Detect Elevations and Gaps in Mapped Sequencing Read Coverage
View source: R/reformatInputFunctions.R
pileupFormatter R Documentation
Reformat input pileup file
Description
Place columns in correct order, clean accessions by removing text after white
space, and name columns
Usage
pileupFormatter(pileup, mode)
Arguments
pileup
A .txt file containing mapped sequencing read coverages averaged over
100 bp windows/bins.
mode
Either "genome" or "metagenome"
ProActive documentation built on April 4, 2025, 12:58 a.m.
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View source: R/reformatInputFunctions.R
| pileupFormatter | R Documentation |
Reformat input pileup file
Description
Place columns in correct order, clean accessions by removing text after white space, and name columns
Usage
pileupFormatter(pileup, mode)
Arguments
pileup |
A .txt file containing mapped sequencing read coverages averaged over 100 bp windows/bins. |
mode |
Either "genome" or "metagenome" |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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