collectBestMatchInfo: Collect information regarding the pattern-match

In ProActive: Detect Elevations and Gaps in Mapped Sequencing Read Coverage

Collect information regarding the pattern-match

Description

Make a list containing the match-score, min and max pattern-match values, the start and stop positions of the elevated or gapped region, the elevation ratio and the classification

Usage

collectBestMatchInfo(pattern, pileupSubset, elevOrGap, leftRightFull)

Arguments

pattern	A vector containing the values associated with the pattern-match
pileupSubset	A subset of the pileup that pertains only to the contig/chunk currently being assessed.
elevOrGap	Pattern-matching on 'elevation' or 'gap' pattern.
leftRightFull	'Left' or'Right' partial gap/elevation pattern or full elevation/gap pattern.

ProActive documentation built on April 4, 2025, 12:58 a.m.