genomeChunks: 'chunk' genomes
In ProActive: Detect Elevations and Gaps in Mapped Sequencing Read Coverage
View source: R/chunkingFunctions.R
genomeChunks R Documentation
'chunk' genomes
Description
Subset genome pileup into chunks for pattern-matching
Usage
genomeChunks(pileup, chunkSize)
Arguments
pileup
A .txt file containing mapped sequencing read coverages averaged over
100 bp windows/bins.
chunkSize
If 'mode'="genome" OR if 'mode'="metagenome" and 'chunkContigs'=TRUE,
chunk the genome or contigs, respectively, into smaller subsets for pattern-matching.
‘chunkSize' determines the size (in bp) of each ’chunk'. Default is 50000.
ProActive documentation built on April 4, 2025, 12:58 a.m.
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View source: R/chunkingFunctions.R
| genomeChunks | R Documentation |
'chunk' genomes
Description
Subset genome pileup into chunks for pattern-matching
Usage
genomeChunks(pileup, chunkSize)
Arguments
pileup |
A .txt file containing mapped sequencing read coverages averaged over 100 bp windows/bins. |
chunkSize |
If 'mode'="genome" OR if 'mode'="metagenome" and 'chunkContigs'=TRUE, chunk the genome or contigs, respectively, into smaller subsets for pattern-matching. ‘chunkSize' determines the size (in bp) of each ’chunk'. Default is 50000. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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