noPattern: No read coverage pattern
In ProActive: Detect Elevations and Gaps in Mapped Sequencing Read Coverage
noPattern R Documentation
No read coverage pattern
Description
Assess whether a contig/chunk does not have an elevated/gapped read coverage pattern.
A horizontal line at the mean or median coverage should be the best
match if the contig/chunk read coverage is not gapped or elevated.
Usage
noPattern(pileupSubset)
Arguments
pileupSubset
A subset of the read coverage dataset that pertains only to
the contig currently being assessed
ProActive documentation built on April 4, 2025, 12:58 a.m.
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| noPattern | R Documentation |
No read coverage pattern
Description
Assess whether a contig/chunk does not have an elevated/gapped read coverage pattern. A horizontal line at the mean or median coverage should be the best match if the contig/chunk read coverage is not gapped or elevated.
Usage
noPattern(pileupSubset)
Arguments
pileupSubset |
A subset of the read coverage dataset that pertains only to the contig currently being assessed |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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