Man pages for ProNet
Biological Network Construction, Visualization and Analyses
| assemble | Operation of networks |
| ath | Arabidopsis thaliana Biogrid PPI database |
| cluster | Network clustering |
| comp.rand.subnet | Comparing a sub network to the randomly simulated ones |
| comp.subnet | Comparing a sub network to the whole one |
| construction | Network construction |
| construct_local | Local network construction |
| construct_nlocal | Non-local network construction |
| enrichment.annotation | GO enrichment annotation |
| extraction | Subnetwork extraction |
| GO_component | GO component annotation database |
| GO_function | GO function annotation database |
| GO_process | GO process annotation database |
| go.profiles | GO enrichment comparison |
| graph.add | Network union |
| HPRD | HPRD PPI database |
| human | Homo sapiens Biogrid PPI database |
| location | Hierarchical plot of biological network |
| locDB | Gene products' location database |
| mcode | MCODE network clustering |
| net.attack | Network attack |
| net.comparing | Comparing two networks |
| net.robustness | Network robustness |
| ProNet-package | Biological Network Construction, Visulization and Analyses |
| topology | Network topology analysis |
| topology_anc | Average neighborhood connectivity statistics |
| topology_betweenness | Betweenness statistics |
| topology_closeness | Closeness statistics |
| topology_cluster_coeffi | Clustering coefficient statistics |
| topology_degree | Degree statistics |
| topology_ec | Eigenvector centrality statistics |
| topology_shortest_paths | Shortest path statistics |
| topology_simple | Basic statistics |
| visualization | Network visualization |
