enrichment.annotation: GO enrichment annotation
In ProNet: Biological Network Construction, Visualization and Analyses

Description Usage Arguments Value References Examples

GO enrichment annotation of the functional molecules or networks.

1	enrichment.annotation(data, onto = c("MF", "BP", "CC"), pvalue = 0.05)

`data`	An igraph object or vector of vertex names.
`onto`	GO categories, three possible values are `MF` for GO function, `BP` for GO process, and `CC` for GO componet
`pvalue`	Significant level. Default value is `0.05`.

Numeric vector, pvalue with the length as the size of data.

The Gene Ontology Consortium (January 2008). The Gene Ontology project in 2008. Nucleic Acids Res. 36 (Database issue): D440?C4.

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entrez<-data.frame(c("121549","51160","83878","11338","196477","9319","608","7015"))
net<-construction(input=entrez,hierarchy=0,species="human",db="Biogrid",ID.type="Entrez Gene")
res<-enrichment.annotation(net,pvalue=0.05,onto="CC")