Description Usage Arguments Value References Examples
View source: R/enrichment.annotation.R
GO enrichment annotation of the functional molecules or networks.
1 | enrichment.annotation(data, onto = c("MF", "BP", "CC"), pvalue = 0.05)
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data |
An igraph object or vector of vertex names. |
onto |
GO categories, three possible values are |
pvalue |
Significant level. Default value is |
Numeric vector, pvalue with the length as the size of data.
The Gene Ontology Consortium (January 2008). The Gene Ontology project in 2008. Nucleic Acids Res. 36 (Database issue): D440?C4.
1 2 3 | entrez<-data.frame(c("121549","51160","83878","11338","196477","9319","608","7015"))
net<-construction(input=entrez,hierarchy=0,species="human",db="Biogrid",ID.type="Entrez Gene")
res<-enrichment.annotation(net,pvalue=0.05,onto="CC")
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