Description Usage Arguments Value See Also Examples
Construction a network from integrated PPI database.
1 2 3 | construct_nlocal(input, db = c("Biogrid", "HPRD"), species = c("human",
"ath"), ID.type = c("Gene symbol", "Entrez Gene"),
hierarchy = 1)
|
input |
A data frame containing the experimental data. |
db |
Integrated PPI database, either |
species |
This parameter indicates the biological species to which analyzable PPI data is related; currently |
ID.type |
The ID type of the biological genes or proteins, possible values are |
hierarchy |
This parameter indicates how many hierarchy are included in the network, currently it can be |
A network in igraph format.
construction
, construct_local
.
1 2 | nlocal<-data.frame(c("DVL1","DVL2","DVL3"))
net<-construct_nlocal(input=nlocal,db="HPRD",species="human",ID.type="Gene symbol",hierarchy=1)
|
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