comp.subnet: Comparing a sub network to the whole one

In ProNet: Biological Network Construction, Visualization and Analyses

Description

Comparing the topological parameters of a sub network and the whole one.

Usage

comp.subnet(x, graph, topology.parameters = TRUE, degree = FALSE,
  cc = FALSE, betweenness = FALSE, eccentricity = FALSE,
  ave.path.len = FALSE, figure.type = 1, method = "utest",
  legendname = c(substitute(x), substitute(graph)))

Arguments

x	Vertex of the sub network.
graph	An igraph object.
topology.parameters	Logical value, indicating whether to do basic compariring (if TRUE) or not (if FALSE).
degree	Logical value, indicating whether to do degree comparing (if TRUE) or not (if FALSE).
cc	Logical value, indicating whether to do clustering coefficient comparing (if TRUE) or not (if FALSE).
betweenness	Logical value, indicating whether to do betweenness comparing (if TRUE) or not (if FALSE).
eccentricity	Logical value, indicating whether to do eccentricity comparing (if TRUE) or not (if FALSE).
ave.path.len	Logical value, indicating whether to do average path comparing (if TRUE) or not (if FALSE).
figure.type	Type of the plot. See plot for more information.
method	Test method, currently only utest is supported.
legendname	Legend name for the plot.

Value

A list of compared parameters and plot.

See Also

comp.rand.subnet, net.comparing

Examples

g<-barabasi.game(100,power=0.8,directed = FALSE)
id<-sample(1:100, 20)
res<-comp.subnet(id,g)
res<-comp.subnet(id,g,topology.parameters=TRUE)

ProNet documentation built on May 30, 2017, 2:02 a.m.