Biological Network Construction, Visualization and Analyses

assemble | Operation of networks |

ath | Arabidopsis thaliana Biogrid PPI database |

cluster | Network clustering |

comp.rand.subnet | Comparing a sub network to the randomly simulated ones |

comp.subnet | Comparing a sub network to the whole one |

construction | Network construction |

construct_local | Local network construction |

construct_nlocal | Non-local network construction |

enrichment.annotation | GO enrichment annotation |

extraction | Subnetwork extraction |

GO_component | GO component annotation database |

GO_function | GO function annotation database |

GO_process | GO process annotation database |

go.profiles | GO enrichment comparison |

graph.add | Network union |

HPRD | HPRD PPI database |

human | Homo sapiens Biogrid PPI database |

location | Hierarchical plot of biological network |

locDB | Gene products' location database |

mcode | MCODE network clustering |

net.attack | Network attack |

net.comparing | Comparing two networks |

net.robustness | Network robustness |

ProNet-package | Biological Network Construction, Visulization and Analyses |

topology | Network topology analysis |

topology_anc | Average neighborhood connectivity statistics |

topology_betweenness | Betweenness statistics |

topology_closeness | Closeness statistics |

topology_cluster_coeffi | Clustering coefficient statistics |

topology_degree | Degree statistics |

topology_ec | Eigenvector centrality statistics |

topology_shortest_paths | Shortest path statistics |

topology_simple | Basic statistics |

visualization | Network visualization |

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