Description Usage Arguments Value See Also Examples
Construction a network from experimental data or integrated PPI database.
1 2 3 |
input |
A data frame containing the experimental data. |
local.net |
Logical value, indicating whether to construct a network from experimental data (if |
node.attribute |
A data frame containing node attributes. Default value is |
db |
Integrated PPI database, either |
species |
This parameter indicates the biological species to which analyzable PPI data is related; currently |
ID.type |
The ID type of the biological genes or proteins, possible values are |
hierarchy |
This parameter indicates how many hierarchy are included in the network, currently it can be |
A network in igraph format.
construct_local
, construct_nlocal
1 2 3 4 5 6 7 | ## Construction a local network.
local<-data.frame(1:5,2:6)
attribute<-data.frame(1:6,c(2.2,5.3,1.2,4.5,6.2,0.6))
net<-construction(input=local,local.net=TRUE,node.attribute=attribute)
## Construction a network from the human HPRD database.
nlocal<-data.frame(c("DVL1","DVL2","DVL3"))
net<-construction(input=nlocal,db="HPRD",species="human",ID.type="Gene symbol",hierarchy=1)
|
Loading required package: Rcpp
Loading required package: igraph
Attaching package: 'igraph'
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
Loading required package: MCL
Loading required package: linkcomm
Loading required package: RColorBrewer
Welcome to linkcomm version 1.0-11
For a step-by-step guide to using linkcomm functions:
> vignette(topic = "linkcomm", package = "linkcomm")
To run an interactive demo:
> demo(topic = "linkcomm", package = "linkcomm")
To cite, see:
> citation("linkcomm")
NOTE: To use linkcomm, you require read and write permissions in the current directory (see: help("getwd"), help("setwd"))
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.