topology_anc: Average neighborhood connectivity statistics

In ProNet: Biological Network Construction, Visualization and Analyses

Description

Average neighborhood connectivity statistics of the network.

Usage

topology_anc(graph)

Arguments

graph

An igraph object.

Value

A data frame containing the average neighborhood connectivity information and plots.

Examples

nlocal<-data.frame(c("DVL1","DVL2","DVL3"))
net<-construction(input=nlocal,db="HPRD",species="human",ID.type="Gene symbol",hierarchy=1)
anc<-topology_anc(net)

Example output

Loading required package: Rcpp
Loading required package: igraph

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

Loading required package: MCL
Loading required package: linkcomm
Loading required package: RColorBrewer

Welcome to linkcomm version 1.0-11

For a step-by-step guide to using linkcomm functions:
   > vignette(topic = "linkcomm", package = "linkcomm")
To run an interactive demo:
   > demo(topic = "linkcomm", package = "linkcomm")
To cite, see:
   > citation("linkcomm")
NOTE: To use linkcomm, you require read and write permissions in the current directory (see: help("getwd"), help("setwd"))

ProNet documentation built on May 30, 2017, 2:02 a.m.