RAM.rank.formatting: Taxonomic Rank Formatting
In RAM: R for Amplicon-Sequencing-Based Microbial-Ecology
Description
Author(s)
See Also
Description
In all RAM functions requiring the user to input a
taxonomic rank, three different formats for this taxon are
accepted. All of these formats are simple character vectors
(strings), and are provided for readability and convenience.
The user only needs to specify any single element from any of
the formats below. The formats are as follows:
- Format 1:
"kingdom", "phylum", "class",
"order", "family", "genus", "species"
- Format 2:
"k", "p", "c", "o", "f", "g", "s"
- Format 3:
"k__", "p__", "c__", "o__",
"f__", "g__", "s__"
Author(s)
Wen Chen and Joshua Simpson.
See Also
RAM documentation built on May 2, 2019, 3:04 p.m.
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Description Author(s) See Also
Description
In all RAM functions requiring the user to input a
taxonomic rank, three different formats for this taxon are
accepted. All of these formats are simple character vectors
(strings), and are provided for readability and convenience.
The user only needs to specify any single element from any of
the formats below. The formats are as follows:
- Format 1:
"kingdom", "phylum", "class", "order", "family", "genus", "species"
- Format 2:
"k", "p", "c", "o", "f", "g", "s"
- Format 3:
"k__", "p__", "c__", "o__", "f__", "g__", "s__"
Author(s)
Wen Chen and Joshua Simpson.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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