RBMRB: BMRB Data Access and Visualization
Version 2.0.4

The Biological Magnetic Resonance Data Bank (BMRB,) collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR(Nuclear Magnetic Resonance) spectroscopic investigations of biological macromolecules and metabolites. This package provides an interface to BMRB database for easy data access and includes a minimal set of data visualization functions. Users are encouraged to make their own data visualizations using BMRB data.

Browse man pages Browse package API and functions Browse package files

AuthorKumaran Baskaran
Date of publication2017-03-03 21:25:44
MaintainerKumaran Baskaran<kbaskaran@bmrb.wisc.edu>
LicenseGPL-2
Version2.0.4
URL https://github.com/uwbmrb/RBMRB https://github.com/kumar-physics/RBMRB
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("RBMRB")

Man pages

chemical_shift_corr: Chemical shift correlation between any two atoms from a...
chemical_shift_hist: Plots chemical shift distribution
chemical_shift_hists: Plots chemical shift distribution for a list of atoms
convert_cs_to_c13hsqc: Reformats chemical shift dataframe for easy plotting
convert_cs_to_n15hsqc: Reformats chemical shift dataframe for easy plotting
convert_cs_to_tocsy: Reformats chemical shift dataframe for easy plotting
export_star_data: Exports NMR-STAR file to BMRB API server
fetch_atom_chemical_shifts: Fetchs atom specific NMR chemical shift data from BMRB...
fetch_entry_chemical_shifts: Fetchs entry specific NMR chemical shift data from BMRB...
fetch_res_chemical_shifts: Fetchs residue specific NMR chemical shift data from BMRB...
filter_residue: Filter for standard 20 amino acids
HSQC_13C: Simulates H1-C13 HSQC spectra for a given entry or list of...
HSQC_15N: Simulates H1-N15 HSQC spectra for a given entry or list of...
makeRandomString: Generates random string of fixed length(for internal use in...
TOCSY: Simulates TOCSY spectra for a given entry or a list of...

Functions

HSQC_13C Man page Source code
HSQC_15N Man page Source code
TOCSY Man page Source code
chemical_shift_corr Man page Source code
chemical_shift_hist Man page Source code
chemical_shift_hists Man page Source code
convert_cs_to_c13hsqc Man page Source code
convert_cs_to_n15hsqc Man page Source code
convert_cs_to_tocsy Man page Source code
export_star_data Man page Source code
fetch_atom_chemical_shifts Man page Source code
fetch_entry_chemical_shifts Man page Source code
fetch_res_chemical_shifts Man page Source code
filter_residue Man page Source code
makeRandomString Man page Source code

Files

NAMESPACE
R
R/RBMRB.R
MD5
DESCRIPTION
man
man/convert_cs_to_tocsy.Rd
man/filter_residue.Rd
man/convert_cs_to_c13hsqc.Rd
man/fetch_entry_chemical_shifts.Rd
man/HSQC_15N.Rd
man/chemical_shift_corr.Rd
man/makeRandomString.Rd
man/chemical_shift_hist.Rd
man/export_star_data.Rd
man/TOCSY.Rd
man/fetch_atom_chemical_shifts.Rd
man/chemical_shift_hists.Rd
man/HSQC_13C.Rd
man/fetch_res_chemical_shifts.Rd
man/convert_cs_to_n15hsqc.Rd
RBMRB documentation built on May 19, 2017, 6:05 p.m.