chemical_shift_hists: Plots chemical shift distribution for a list of atoms

In RBMRB: BMRB Data Access and Visualization

Description

Plots the histogram (or) density of chemical shift distribution of a given list of atoms. Atoms from different residues cam be specified as "residue-atom". Exammple "ALA-CA","GLN-HE21","GLN-HE*"

Usage

chemical_shift_hists(
  atm = NA,
  type = "count",
  bw = 0.1,
  cutoff = 8,
  interactive = TRUE
)

Arguments

atm	list Example: c("ALA-CA","GLY-CA")
type	count ; other than count will assume density plot
bw	binwith for histogram; default value 0.1ppm
cutoff	values not with in the cutoff time standard deviation from both sides ofthe mean will be excluded from the plot;default value 8
interactive	TRUE/FALSE default TRUE

Value

R plot object

See Also

fetch_res_chemical_shifts,filter_residue and chem_shift_corr and atom_chem_shift_corr

Examples

#plt<-chemical_shift_hists(c('ALA-C*'))
#plots the histogram of all atoms of ALA
#plt<-chemical_shift_hists(c("GLY-H*","ALA-HA"),type='density')
#plots the density plot

Example output

RBMRB documentation built on July 11, 2021, 5:06 p.m.