chem_shift_corr: Chemical shift correlation between any two atoms from a...

Description Usage Arguments Value See Also Examples

View source: R/RBMRB.R

Description

Plots the correlated chemical shift distribution of any two atoms in a single residue for the 20 standard amino acids from BMRB database. By default it will generate interactive graphics using plotly library

Usage

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chem_shift_corr(atom1, atom2, res = NA, type = "c", interactive = TRUE)

Arguments

atom1

atom name in NMR-STAR nomenclature like CA,CB2

atom2

atom name in NMR_STAR nomenclature like HA,HB2

res

residue name like ALA,GLY (optional by default includes all possible amino acids)

type

'c' for contour plot and 's' for scatter plot default 'c'.scatter plot will be slow and heavy for large data set

interactive

TRUE/FALSE default=TRUE

Value

plot object

See Also

fetch_atom_chemical_shifts and atom_chem_shift_corr

Examples

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#plt<-chem_shift_corr('HE21','HE22')
#plots the chemical shift distribution between HE21 and HE22

RBMRB documentation built on May 2, 2019, 10:13 a.m.