chem_shift_corr: Chemical shift correlation between any two atoms from a...

In RBMRB: BMRB Data Access and Visualization

Description

Plots the correlated chemical shift distribution of any two atoms in a single residue for the 20 standard amino acids from BMRB database. By default it will generate interactive graphics using plotly library

Usage

chem_shift_corr(atom1, atom2, res = NA, type = "c", interactive = TRUE)

Arguments

atom1	atom name in NMR-STAR nomenclature like CA,CB2
atom2	atom name in NMR_STAR nomenclature like HA,HB2
res	residue name like ALA,GLY (optional by default includes all possible amino acids)
type	'c' for contour plot and 's' for scatter plot default 'c'.scatter plot will be slow and heavy for large data set
interactive	TRUE/FALSE default=TRUE

Value

plot object

See Also

fetch_atom_chemical_shifts and atom_chem_shift_corr

Examples

#plt<-chem_shift_corr('HE21','HE22')
#plots the chemical shift distribution between HE21 and HE22

Example output

RBMRB documentation built on July 11, 2021, 5:06 p.m.