Description Usage Arguments Value See Also Examples
Plots the histogram (or) density of chemical shift distribution of a given atom from amino acid (or) nucleic acid from BMRB database. Optionally particular atom can be specified in the parameter
1 | chemical_shift_hist(res = "*", atm = "*", type = "count", bw = 0.1, cutoff = 8)
|
res |
residue name in NMR-STAR atom nomenclature ; Example: ALA,GLY ; default '*' (includes everything) |
atm |
atom name in NMR-STAR nomenclautre ; Example :CA,HB2 default '*' (includes all atoms) |
type |
count ; other than count will assume density plot |
bw |
binwith for histogram; default value 0.1ppm |
cutoff |
values not with in the cutoff time standard deviation from both sides ofthe mean will be excluded from the plot;default value 8 |
R plot object
fetch_res_chemical_shifts
,filter_residue
and chem_shift_corr
and atom_chem_shift_corr
1 2 3 4 5 6 | #plt<-chemical_shift_hist('ALA')
#plots the histogram of all atoms of ALA
#plt<-chemical_shift_hist("*","CB*")
#plots CB chemical shift distribution of standard amino acids
#plt<-chemical_shift_hist('GLY',type='density')
#plots the density plot
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.