plotCoverage: A function to scatterplot 'score' column of a BED dataframe...

In Repliscope: Replication Timing Profiling using DNA Copy Number

A function to scatterplot 'score' column of a BED dataframe plotCoverage function plots values in the 'score' column of the supplied bed dataframe as a function of chromosome coordinates. The genome wide median is plotted as a pink line.

Description

A function to scatterplot 'score' column of a BED dataframe plotCoverage function plots values in the 'score' column of the supplied bed dataframe as a function of chromosome coordinates. The genome wide median is plotted as a pink line.

Usage

plotCoverage(bed, region = FALSE, plotting = TRUE)

Arguments

bed	A dataframe containing 'score','chrom','chromStart' and 'chromEnd' columns (dataframe).
region	Only plot for the provided region in the format 'chrI:1000-3000' (string, optional).
plotting	Should the plot object be sent to the default device? (boolean, defaults to TRUE).

Examples

plotCoverage(W303_G2)
plotObject <- plotCoverage(W303_S,plotting=FALSE)

Repliscope documentation built on Sept. 13, 2022, 9:05 a.m.