trimRatio: A function to remove outliers from the "ratio" column of a...

In Repliscope: Replication Timing Profiling using DNA Copy Number

A function to remove outliers from the "ratio" column of a supplied ratio dataframe trimRatio is applied to the calculated ratio of read counts from a replicating to a non-replicating samples.

Description

A function to remove outliers from the "ratio" column of a supplied ratio dataframe trimRatio is applied to the calculated ratio of read counts from a replicating to a non-replicating samples.

Usage

trimRatio(ratioDF, loLim, hiLim)

Arguments

ratioDF	A ratio dataframe containing 'ratio' column (dataframe, required).
loLim	Low limit threshold (double, required).
hiLim	High limit threshold (double, required).

Examples

W303 <- trimRatio(W303,0.5,1.5)

Repliscope documentation built on Sept. 13, 2022, 9:05 a.m.