plotTrep: A function to scatterplot 'Trep' column of a Trep dataframe...
In Repliscope: Replication Timing Profiling using DNA Copy Number
plotTrep R Documentation
A function to scatterplot 'Trep' column of a Trep dataframe
plotTrep function plots values in the 'Trep' column of the supplied dataframe as a function of
chromosome coordinates. The genome wide median is plotted as a pink line.
Description
A function to scatterplot 'Trep' column of a Trep dataframe
plotTrep function plots values in the 'Trep' column of the supplied dataframe as a function of
chromosome coordinates. The genome wide median is plotted as a pink line.
Usage
plotTrep(TrepDF, region = FALSE, plotting = TRUE)
Arguments
TrepDF
A dataframe containing 'chrom','chromStart', 'chromEnd' and 'Trep' columns (dataframe).
region
Only plot for the provided region in the format 'chrI:1000-3000' (string, optional).
plotting
Should the plot object be sent to the default device? (boolean, defaults to TRUE).
Examples
plotTrep(TrepDF,region="chrI")
Repliscope documentation built on Sept. 13, 2022, 9:05 a.m.
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| plotTrep | R Documentation |
A function to scatterplot 'Trep' column of a Trep dataframe plotTrep function plots values in the 'Trep' column of the supplied dataframe as a function of chromosome coordinates. The genome wide median is plotted as a pink line.
Description
A function to scatterplot 'Trep' column of a Trep dataframe plotTrep function plots values in the 'Trep' column of the supplied dataframe as a function of chromosome coordinates. The genome wide median is plotted as a pink line.
Usage
plotTrep(TrepDF, region = FALSE, plotting = TRUE)
Arguments
TrepDF |
A dataframe containing 'chrom','chromStart', 'chromEnd' and 'Trep' columns (dataframe). |
region |
Only plot for the provided region in the format 'chrI:1000-3000' (string, optional). |
plotting |
Should the plot object be sent to the default device? (boolean, defaults to TRUE). |
Examples
plotTrep(TrepDF,region="chrI")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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