Rga4gh: An Interface to the GA4GH API
Version 0.1.1

An Interface to the GA4GH API that allows users to easily GET responses and POST requests to GA4GH Servers. See for more information about the GA4GH project.

AuthorHarry Peaker
Date of publication2016-11-07 21:07:40
MaintainerHarry Peaker <harry.peaker@aridhia.com>
LicenseGPL-2
Version0.1.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("Rga4gh")

Getting started

README.md

Popular man pages

get_call_set: GET a Call Set
get_dataset: GET a Dataset
get_ga4gh: GET an Object
get_individual: GET an Individual
get_variant_annotation_set: GET a Variant Annotation Set
post_ga4gh: POST to a GA4GH Server
search_feature_phenotype_associations: Search for Feature Phenotype Associations
See all...

All man pages Function index File listing

Man pages

ga4gh_client: GA4GH Client
get_bio_sample: GET a Bio Sample
get_call_set: GET a Call Set
get_dataset: GET a Dataset
get_expression_level: GET an Expression Level
get_feature: GET a Feature
get_feature_set: GET a Feature Set
get_ga4gh: GET an Object
get_individual: GET an Individual
get_read_group: GET a Read Group
get_read_group_set: GET a Read Group Set
get_reference_id: GET a Reference
get_reference_set: GET a Reference Set
get_rna_quantification: GET an RNA Quantification
get_rna_quantification_set: GET an RNA Quantification Set
get_variant: GET a Variant
get_variant_annotation_set: GET a Variant Annotation Set
get_variant_set: GET a Variant Set
post_ga4gh: POST to a GA4GH Server
search_bio_samples: Search for Bio Samples
search_call_sets: Search for Call Sets
search_datasets: Search for Datasets
search_expression_levels: Search for Expression Levels
search_feature_phenotype_associations: Search for Feature Phenotype Associations
search_features: Search for Features
search_feature_sets: Search for Feature Sets
search_ga4gh: Search
search_individuals: Search for Individuals
search_phenotype_association_sets: Search for Phenotype Association Sets
search_phenotypes: Search for Phenotypes
search_read_group_sets: Search for Read Group Sets
search_reads: Search for Reads
search_reference_bases: Search for Reference Bases
search_references: Search for References
search_reference_sets: Search for Reference Sets
search_rna_quantifications: Search for RNA Quantifications
search_rna_quantification_sets: Search for RNA Quantification Sets
search_variant_annotations: Search for Variant Annotations
search_variant_annotation_sets: Search for Variant Annotation Sets
search_variants: Search for Variants
search_variant_sets: Search for Variant Sets

Functions

check_body Source code
ga4gh_client Man page Source code
get_bio_sample Man page Source code
get_call_set Man page Source code
get_dataset Man page Source code
get_expression_level Man page Source code
get_feature Man page Source code
get_feature_set Man page Source code
get_ga4gh Man page Source code
get_ga4gh.default Man page Source code
get_ga4gh.ga4ghClient Man page Source code
get_ga4gh.list Man page Source code
get_individual Man page Source code
get_read_group Man page Source code
get_read_group_set Man page Source code
get_reference Man page Source code
get_reference_id Man page
get_reference_set Man page Source code
get_rna_quantification Man page Source code
get_rna_quantification_set Man page Source code
get_variant Man page Source code
get_variant_annotation_set Man page Source code
get_variant_set Man page Source code
post_ga4gh Man page Source code
search_bio_samples Man page Source code
search_call_sets Man page Source code
search_datasets Man page Source code
search_expression_levels Man page Source code
search_feature_phenotype_associations Man page Source code
search_feature_sets Man page Source code
search_features Man page Source code
search_ga4gh Man page Source code
search_ga4gh.default Man page Source code
search_ga4gh.ga4ghClient Man page Source code
search_ga4gh.list Man page Source code
search_individuals Man page Source code
search_phenotype_association_sets Man page Source code
search_phenotypes Man page Source code
search_read_group_sets Man page Source code
search_reads Man page Source code
search_reference_bases Man page Source code
search_reference_sets Man page Source code
search_references Man page Source code
search_rna_quantification_sets Man page Source code
search_rna_quantifications Man page Source code
search_variant_annotation_sets Man page Source code
search_variant_annotations Man page Source code
search_variant_sets Man page Source code
search_variants Man page Source code

Files

NAMESPACE
R
R/get_ga4gh.R
R/check_body.R
R/search_ga4gh.R
R/get.R
R/search.R
R/post_ga4gh.R
R/ga4gh_client.R
README.md
MD5
DESCRIPTION
man
man/ga4gh_client.Rd
man/get_variant.Rd
man/get_rna_quantification_set.Rd
man/search_individuals.Rd
man/get_bio_sample.Rd
man/get_read_group_set.Rd
man/search_variant_annotation_sets.Rd
man/search_bio_samples.Rd
man/search_reference_bases.Rd
man/search_references.Rd
man/get_feature.Rd
man/search_read_group_sets.Rd
man/search_feature_phenotype_associations.Rd
man/post_ga4gh.Rd
man/search_phenotypes.Rd
man/search_rna_quantification_sets.Rd
man/search_datasets.Rd
man/search_phenotype_association_sets.Rd
man/get_individual.Rd
man/get_read_group.Rd
man/search_reference_sets.Rd
man/search_variants.Rd
man/search_variant_sets.Rd
man/search_call_sets.Rd
man/search_rna_quantifications.Rd
man/search_variant_annotations.Rd
man/search_features.Rd
man/search_ga4gh.Rd
man/get_call_set.Rd
man/get_expression_level.Rd
man/get_variant_set.Rd
man/search_feature_sets.Rd
man/search_expression_levels.Rd
man/get_ga4gh.Rd
man/get_reference_id.Rd
man/get_dataset.Rd
man/search_reads.Rd
man/get_variant_annotation_set.Rd
man/get_reference_set.Rd
man/get_feature_set.Rd
man/get_rna_quantification.Rd
Rga4gh documentation built on May 19, 2017, 6:58 a.m.

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