Rga4gh: An Interface to the GA4GH API

An Interface to the GA4GH API that allows users to easily GET responses and POST requests to GA4GH Servers. See <http://ga4gh.org> for more information about the GA4GH project.

AuthorHarry Peaker
Date of publication2016-11-07 21:07:40
MaintainerHarry Peaker <harry.peaker@aridhia.com>
LicenseGPL-2
Version0.1.1

View on CRAN

Man pages

ga4gh_client: GA4GH Client

get_bio_sample: GET a Bio Sample

get_call_set: GET a Call Set

get_dataset: GET a Dataset

get_expression_level: GET an Expression Level

get_feature: GET a Feature

get_feature_set: GET a Feature Set

get_ga4gh: GET an Object

get_individual: GET an Individual

get_read_group: GET a Read Group

get_read_group_set: GET a Read Group Set

get_reference_id: GET a Reference

get_reference_set: GET a Reference Set

get_rna_quantification: GET an RNA Quantification

get_rna_quantification_set: GET an RNA Quantification Set

get_variant: GET a Variant

get_variant_annotation_set: GET a Variant Annotation Set

get_variant_set: GET a Variant Set

post_ga4gh: POST to a GA4GH Server

search_bio_samples: Search for Bio Samples

search_call_sets: Search for Call Sets

search_datasets: Search for Datasets

search_expression_levels: Search for Expression Levels

search_feature_phenotype_associations: Search for Feature Phenotype Associations

search_features: Search for Features

search_feature_sets: Search for Feature Sets

search_ga4gh: Search

search_individuals: Search for Individuals

search_phenotype_association_sets: Search for Phenotype Association Sets

search_phenotypes: Search for Phenotypes

search_read_group_sets: Search for Read Group Sets

search_reads: Search for Reads

search_reference_bases: Search for Reference Bases

search_references: Search for References

search_reference_sets: Search for Reference Sets

search_rna_quantifications: Search for RNA Quantifications

search_rna_quantification_sets: Search for RNA Quantification Sets

search_variant_annotations: Search for Variant Annotations

search_variant_annotation_sets: Search for Variant Annotation Sets

search_variants: Search for Variants

search_variant_sets: Search for Variant Sets

Functions

ga4gh_client Man page
get_bio_sample Man page
get_call_set Man page
get_dataset Man page
get_expression_level Man page
get_feature Man page
get_feature_set Man page
get_ga4gh Man page
get_ga4gh.default Man page
get_ga4gh.ga4ghClient Man page
get_ga4gh.list Man page
get_individual Man page
get_read_group Man page
get_read_group_set Man page
get_reference Man page
get_reference_id Man page
get_reference_set Man page
get_rna_quantification Man page
get_rna_quantification_set Man page
get_variant Man page
get_variant_annotation_set Man page
get_variant_set Man page
post_ga4gh Man page
search_bio_samples Man page
search_call_sets Man page
search_datasets Man page
search_expression_levels Man page
search_feature_phenotype_associations Man page
search_features Man page
search_feature_sets Man page
search_ga4gh Man page
search_ga4gh.default Man page
search_ga4gh.ga4ghClient Man page
search_ga4gh.list Man page
search_individuals Man page
search_phenotype_association_sets Man page
search_phenotypes Man page
search_read_group_sets Man page
search_reads Man page
search_reference_bases Man page
search_references Man page
search_reference_sets Man page
search_rna_quantifications Man page
search_rna_quantification_sets Man page
search_variant_annotations Man page
search_variant_annotation_sets Man page
search_variants Man page
search_variant_sets Man page

Files

Rga4gh
Rga4gh/NAMESPACE
Rga4gh/R
Rga4gh/R/get_ga4gh.R Rga4gh/R/check_body.R Rga4gh/R/search_ga4gh.R Rga4gh/R/get.R Rga4gh/R/search.R Rga4gh/R/post_ga4gh.R Rga4gh/R/ga4gh_client.R
Rga4gh/README.md
Rga4gh/MD5
Rga4gh/DESCRIPTION
Rga4gh/man
Rga4gh/man/ga4gh_client.Rd Rga4gh/man/get_variant.Rd Rga4gh/man/get_rna_quantification_set.Rd Rga4gh/man/search_individuals.Rd Rga4gh/man/get_bio_sample.Rd Rga4gh/man/get_read_group_set.Rd Rga4gh/man/search_variant_annotation_sets.Rd Rga4gh/man/search_bio_samples.Rd Rga4gh/man/search_reference_bases.Rd Rga4gh/man/search_references.Rd Rga4gh/man/get_feature.Rd Rga4gh/man/search_read_group_sets.Rd Rga4gh/man/search_feature_phenotype_associations.Rd Rga4gh/man/post_ga4gh.Rd Rga4gh/man/search_phenotypes.Rd Rga4gh/man/search_rna_quantification_sets.Rd Rga4gh/man/search_datasets.Rd Rga4gh/man/search_phenotype_association_sets.Rd Rga4gh/man/get_individual.Rd Rga4gh/man/get_read_group.Rd Rga4gh/man/search_reference_sets.Rd Rga4gh/man/search_variants.Rd Rga4gh/man/search_variant_sets.Rd Rga4gh/man/search_call_sets.Rd Rga4gh/man/search_rna_quantifications.Rd Rga4gh/man/search_variant_annotations.Rd Rga4gh/man/search_features.Rd Rga4gh/man/search_ga4gh.Rd Rga4gh/man/get_call_set.Rd Rga4gh/man/get_expression_level.Rd Rga4gh/man/get_variant_set.Rd Rga4gh/man/search_feature_sets.Rd Rga4gh/man/search_expression_levels.Rd Rga4gh/man/get_ga4gh.Rd Rga4gh/man/get_reference_id.Rd Rga4gh/man/get_dataset.Rd Rga4gh/man/search_reads.Rd Rga4gh/man/get_variant_annotation_set.Rd Rga4gh/man/get_reference_set.Rd Rga4gh/man/get_feature_set.Rd Rga4gh/man/get_rna_quantification.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.