Rga4gh: An Interface to the GA4GH API

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An Interface to the GA4GH API that allows users to easily GET responses and POST requests to GA4GH Servers. See <http://ga4gh.org> for more information about the GA4GH project.

Author
Harry Peaker
Date of publication
2016-11-07 21:07:40
Maintainer
Harry Peaker <harry.peaker@aridhia.com>
License
GPL-2
Version
0.1.1

View on CRAN

Man pages

ga4gh_client
GA4GH Client
get_bio_sample
GET a Bio Sample
get_call_set
GET a Call Set
get_dataset
GET a Dataset
get_expression_level
GET an Expression Level
get_feature
GET a Feature
get_feature_set
GET a Feature Set
get_ga4gh
GET an Object
get_individual
GET an Individual
get_read_group
GET a Read Group
get_read_group_set
GET a Read Group Set
get_reference_id
GET a Reference
get_reference_set
GET a Reference Set
get_rna_quantification
GET an RNA Quantification
get_rna_quantification_set
GET an RNA Quantification Set
get_variant
GET a Variant
get_variant_annotation_set
GET a Variant Annotation Set
get_variant_set
GET a Variant Set
post_ga4gh
POST to a GA4GH Server
search_bio_samples
Search for Bio Samples
search_call_sets
Search for Call Sets
search_datasets
Search for Datasets
search_expression_levels
Search for Expression Levels
search_feature_phenotype_associations
Search for Feature Phenotype Associations
search_features
Search for Features
search_feature_sets
Search for Feature Sets
search_ga4gh
Search
search_individuals
Search for Individuals
search_phenotype_association_sets
Search for Phenotype Association Sets
search_phenotypes
Search for Phenotypes
search_read_group_sets
Search for Read Group Sets
search_reads
Search for Reads
search_reference_bases
Search for Reference Bases
search_references
Search for References
search_reference_sets
Search for Reference Sets
search_rna_quantifications
Search for RNA Quantifications
search_rna_quantification_sets
Search for RNA Quantification Sets
search_variant_annotations
Search for Variant Annotations
search_variant_annotation_sets
Search for Variant Annotation Sets
search_variants
Search for Variants
search_variant_sets
Search for Variant Sets

Files in this package

Rga4gh
Rga4gh/NAMESPACE
Rga4gh/R
Rga4gh/R/get_ga4gh.R
Rga4gh/R/check_body.R
Rga4gh/R/search_ga4gh.R
Rga4gh/R/get.R
Rga4gh/R/search.R
Rga4gh/R/post_ga4gh.R
Rga4gh/R/ga4gh_client.R
Rga4gh/README.md
Rga4gh/MD5
Rga4gh/DESCRIPTION
Rga4gh/man
Rga4gh/man/ga4gh_client.Rd
Rga4gh/man/get_variant.Rd
Rga4gh/man/get_rna_quantification_set.Rd
Rga4gh/man/search_individuals.Rd
Rga4gh/man/get_bio_sample.Rd
Rga4gh/man/get_read_group_set.Rd
Rga4gh/man/search_variant_annotation_sets.Rd
Rga4gh/man/search_bio_samples.Rd
Rga4gh/man/search_reference_bases.Rd
Rga4gh/man/search_references.Rd
Rga4gh/man/get_feature.Rd
Rga4gh/man/search_read_group_sets.Rd
Rga4gh/man/search_feature_phenotype_associations.Rd
Rga4gh/man/post_ga4gh.Rd
Rga4gh/man/search_phenotypes.Rd
Rga4gh/man/search_rna_quantification_sets.Rd
Rga4gh/man/search_datasets.Rd
Rga4gh/man/search_phenotype_association_sets.Rd
Rga4gh/man/get_individual.Rd
Rga4gh/man/get_read_group.Rd
Rga4gh/man/search_reference_sets.Rd
Rga4gh/man/search_variants.Rd
Rga4gh/man/search_variant_sets.Rd
Rga4gh/man/search_call_sets.Rd
Rga4gh/man/search_rna_quantifications.Rd
Rga4gh/man/search_variant_annotations.Rd
Rga4gh/man/search_features.Rd
Rga4gh/man/search_ga4gh.Rd
Rga4gh/man/get_call_set.Rd
Rga4gh/man/get_expression_level.Rd
Rga4gh/man/get_variant_set.Rd
Rga4gh/man/search_feature_sets.Rd
Rga4gh/man/search_expression_levels.Rd
Rga4gh/man/get_ga4gh.Rd
Rga4gh/man/get_reference_id.Rd
Rga4gh/man/get_dataset.Rd
Rga4gh/man/search_reads.Rd
Rga4gh/man/get_variant_annotation_set.Rd
Rga4gh/man/get_reference_set.Rd
Rga4gh/man/get_feature_set.Rd
Rga4gh/man/get_rna_quantification.Rd