search_references: Search for References

In Rga4gh: An Interface to the GA4GH API

Description

Search for References

Usage

search_references(client, reference_set_id = NULL, accession = NULL,
  md5checksum = NULL, page_size = NULL, page_token = NULL)

Arguments

client	A ga4gh_client object
reference_set_id	The ID of the Reference Set to search within
accession	Return the References for which the accession matches this string (case-sensitive, exact match).
md5checksum	Return the References for which the md5checksum matches this string (case-sensitive, exact match).
page_size	Specifies the maximum number of results to return in a single page. If unspecified, the client default will be used.
page_token	The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of nextPageToken from the previous response.

Examples

ref_client <- ga4gh_client("http://1kgenomes.ga4gh.org", api_location = "")

## Not run: 
library(magrittr)
## Find a reference set to search in
reference_sets <- ref_client %>% search_reference_sets() %>% content()
rs_id <- reference_sets$referenceSets[[1]]$id

## Search for references in the reference set
references <- ref_client %>% search_references(rs_id) %>% content()
references

## End(Not run)

Rga4gh documentation built on May 1, 2019, 6:35 p.m.