search_rna_quantifications: Search for RNA Quantifications

In Rga4gh: An Interface to the GA4GH API

Description

Search for RNA Quantifications

Usage

search_rna_quantifications(client, rna_quantification_set_id,
  page_size = NULL, page_token = NULL)

Arguments

client	A ga4gh_client object
rna_quantification_set_id	The ID of the RNA Quantification Set to search within
page_size	Specifies the maximum number of results to return in a single page. If unspecified, the client default will be used.
page_token	The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of nextPageToken from the previous response.

Examples

ref_client <- ga4gh_client("http://1kgenomes.ga4gh.org", api_location = "")

## Not run: 

library(magrittr)
## Find a dataset to search in
datasets <- ref_client %>% search_datasets() %>% content()
d_id <- datasets$datasets[[1]]$id

## Find an rna quantification set to search in
rna_quantification_sets <- ref_client %>%
 search_rna_quantification_sets(d_id) %>% content()
rqs_id <- rna_quantification_sets$rnaQuantificationSets[[1]]$id

## Search for rna quantifications in the rna quantification set
rna_quantifications <- ref_client %>%
 search_rna_quantifications(rqs_id) %>% content()
rna_quantifications

## End(Not run)

Rga4gh documentation built on May 1, 2019, 6:35 p.m.