search_read_group_sets: Search for Read Group Sets

Description Usage Arguments Examples

View source: R/search.R

Description

Search for Read Group Sets

Usage

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search_read_group_sets(client, dataset_id = NULL, bio_sample_id = NULL,
  name = NULL, page_size = NULL, page_token = NULL)

Arguments

client

A ga4gh_client object

dataset_id

The ID of the Dataset to search within

bio_sample_id

Specifying the id of a BioSample record will return only readgroups with the given bio_sample_id.

name

Only return read group sets with this name (case-sensitive, exact match).

page_size

Specifies the maximum number of results to return in a single page. If unspecified, the client default will be used.

page_token

The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of nextPageToken from the previous response.

Examples

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ref_client <- ga4gh_client("http://1kgenomes.ga4gh.org", api_location = "")

## Not run: 
library(magrittr)
## Find a dataset to search in
datasets <- ref_client %>% search_datasets() %>% content()
d_id <- datasets$datasets[[1]]$id

## Search for read group sets in the dataset
read_group_sets <- ref_client %>% search_read_group_sets(d_id) %>% content()
read_group_sets

## End(Not run)

Rga4gh documentation built on May 29, 2017, 9:12 a.m.