search_read_group_sets: Search for Read Group Sets

In Rga4gh: An Interface to the GA4GH API

Description

Search for Read Group Sets

Usage

search_read_group_sets(client, dataset_id = NULL, bio_sample_id = NULL,
  name = NULL, page_size = NULL, page_token = NULL)

Arguments

client	A ga4gh_client object
dataset_id	The ID of the Dataset to search within
bio_sample_id	Specifying the id of a BioSample record will return only readgroups with the given bio_sample_id.
name	Only return read group sets with this name (case-sensitive, exact match).
page_size	Specifies the maximum number of results to return in a single page. If unspecified, the client default will be used.
page_token	The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of nextPageToken from the previous response.

Examples

ref_client <- ga4gh_client("http://1kgenomes.ga4gh.org", api_location = "")

## Not run: 
library(magrittr)
## Find a dataset to search in
datasets <- ref_client %>% search_datasets() %>% content()
d_id <- datasets$datasets[[1]]$id

## Search for read group sets in the dataset
read_group_sets <- ref_client %>% search_read_group_sets(d_id) %>% content()
read_group_sets

## End(Not run)

Rga4gh documentation built on May 1, 2019, 6:35 p.m.