search_variant_annotation_sets: Search for Variant Annotation Sets

In Rga4gh: An Interface to the GA4GH API

Description

Search for Variant Annotation Sets

Usage

search_variant_annotation_sets(client, variant_set_id, page_size = NULL,
  page_token = NULL)

Arguments

client	A ga4gh_client object
variant_set_id	The ID of the Variant Set to Search
page_size	Specifies the maximum number of results to return in a single page. If unspecified, the client default will be used.
page_token	The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of nextPageToken from the previous response.

Examples

ref_client <- ga4gh_client("http://1kgenomes.ga4gh.org", api_location = "")

## Not run: 
## Find a dataset to search in
datasets <- ref_client %>% search_datasets() %>% content
d_id <- datasets$datasets[[1]]$id

## Find a variant set to search in
variant_sets <- ref_client %>% search_variant_sets(d_id) %>% content()
vs_id <- variant_sets$variantSets[[2]]$id

## Search for variant annotation sets in the variant set
variant_annotation_sets <- ref_client %>%
 search_variant_annotation_sets(vs_id) %>% content()
variant_annotation_sets

## End(Not run)

Rga4gh documentation built on May 1, 2019, 6:35 p.m.