get_ga4gh: GET an Object

In Rga4gh: An Interface to the GA4GH API

Description

GET an object from the GA4GH API

Usage

get_ga4gh(object, ...)

## S3 method for class 'ga4ghClient'
get_ga4gh(object, operation, id, ...)

## Default S3 method:
get_ga4gh(object, operation, id, port = NULL, ...)

## S3 method for class 'list'
get_ga4gh(object, operation, id, ...)

Arguments

object	An object to GET from. I.e. A ga4ghClient object, a url for the server or a list of either.
...	Arguments to pass to other methods
operation	The name of the operation. Eg "datasets"
id	The ID of the Object
port	The port number

Examples

ref_client <- ga4gh_client("http://1kgenomes.ga4gh.org", api_location = "")

## Not run: 

## Use the client and get an object from the api
ref_client %>% get_ga4gh("datasets", "id")

## Or provide the API location as a string
get_ga4gh("http://1kgenomes.ga4gh.org", "datasets", "id")

## End(Not run)

Rga4gh documentation built on May 1, 2019, 6:35 p.m.