search_call_sets: Search for Call Sets

In Rga4gh: An Interface to the GA4GH API

Description

Search for Call Sets

Usage

search_call_sets(client, variant_set_id = NULL, bio_sample_id = NULL,
  name = NULL, page_size = NULL, page_token = NULL)

Arguments

client	A ga4gh_client object
variant_set_id	The ID of the Variant Set to search within
bio_sample_id	Return only call sets generated from the provided BioSample ID.
name	Only return call sets with this name (case-sensitive, exact match).
page_size	Specifies the maximum number of results to return in a single page. If unspecified, the client default will be used.
page_token	The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of nextPageToken from the previous response.

Examples

ref_client <- ga4gh_client("http://1kgenomes.ga4gh.org", api_location = "")

## Not run: 
library(magrittr)
## Find a dataset to search in
datasets <- ref_client %>% search_datasets() %>% content()
d_id <- datasets$datasets[[1]]$id

## Find a variant set to search in
variant_sets <- ref_client %>% search_variant_sets(d_id) %>% content()
vs_id <- variant_sets$variantSets[[1]]$id

## Search for call sets in the variant set
call_sets <- ref_client %>% search_call_sets(vs_id) %>% content()
call_sets


## End(Not run)

Rga4gh documentation built on May 1, 2019, 6:35 p.m.