Man pages for SBMSplitMerge
Inference for a Generalised SBM with a Split Merge Sampler
| accept | accept 'propsbm' with the acceptance probability alpha |
| addblock | Add a block move |
| ARI | Adjusted Rand Index |
| blockmat | Block matrix |
| blockmat.blocks | Block matrix |
| blockmat.numeric | Block matrix |
| blockmat.sbm | Block matrix |
| blockmod | Block Model |
| blocks | Blocks object |
| blocktrace | plot a trace of the blocks from MCMC samples |
| crp | Chinese Restaurant Process |
| ddirichlet | Dirichlet distribution |
| dedges | Density of edges |
| dedges.numeric | likelihood of edges |
| dedges.sbm | Density of edges |
| delblock | Delete a block move |
| dma | Dirichlet Multinomial Allocation |
| drawblock.dp | Draw block membership |
| drawblock.gibbs | Gibbs-like reassignment of nodes to the current set of blocks |
| drawblocks.dp | Draw block memberships |
| drawblocks.gibbs | Gibbs-like reassignment of nodes to the current set of blocks |
| drawparams | Metropolis updates by drawing parameters |
| edgemod | Class for edge models |
| edges | Class for edge data |
| edges_bern | Bernoulli edge model |
| edges_nbin | Negative-Binomial edge model |
| edges_norm | Normal edge model |
| edges_pois | Poisson edge model |
| Enron | The Enron data set as extracted from 'igraph' using the... |
| eval_plots | get a set of evaluation plots from MCMC samples |
| is.sbm | is.sbm |
| Macaque | The Macaque data set as extracted from 'igraph' using the... |
| marglike_bern | Marginal likelihood model for Bernoulli distributed edges |
| marglike_norm | Marginal likelihood model for Normal distributed edges |
| marglike_pois | Marginal likelihood model for Poisson distributed edges |
| mergeavg | Merge blocks |
| mergeblocks | merge move block merging |
| mergeparams | merge parameters |
| mergeparams.default | Merge step: parameters |
| mergeparams.numeric | Merge step - parameter merging |
| modeblocks | modal block assignments from MCMC samples |
| multinom | Multinomial block assignment |
| nodelike | Likelihood of node assignment |
| numblockstrace | plot a trace of the number of blocks from MCMC samples |
| param_beta | Beta parameter model |
| param_gamma | Gamma parameter model |
| parammat | Parameter Matrix |
| parammat.blocks | Parameter Matrix |
| parammat.matrix | Parameter Matrix |
| parammat.params | Parameter Matrix |
| parammat.sbm | Parameter Matrix |
| parammod | Parameter Model |
| param_nbin | Parameter model for Negative Binomial |
| param_norm | Parameter model for Normal Model |
| params | 'params' S3 object |
| paramtrace | plot a trace of parameter values from MCMC samples |
| plot.blocks | Plot blocks |
| plot.edges | Plot |
| plotpostpairs | helper function for trace plots |
| plot.sbm | Plot for 'sbm' object |
| postpairs | mean proportion of times two nodes were in the same block... |
| rcat | Draw draw Categorical distribution |
| rdirichlet | Dirichlet distribution |
| redges | Simulate edges |
| rw | Random Walk |
| sampler | top level sampler function |
| sampler.conj | Conjugate model sampler |
| sampler.dp | Dirichlet process sampler |
| sampler.gibbs | Gibbs sampling for node assignments |
| sampler.rj | reversible jump Markov chain Monte Carlo split-merge sampler |
| sbm | Class 'sbm' |
| sbmmod | Stochastic block model object |
| splitavg | split move using average to merge parameters |
| splitblocks | split move: blocks |
| splitparams | split move: parameters |
| splitparams.numeric | split move: 'params' |
| splitparams.params | split move: 'params' |
| StackOverflow | The Stack-Overflow data set as extracted from 'igraph' using... |
| updateblock | Update the block assignment of a node |
| updateblock.blocks | Update the block assignment of a node |
| updateblock.sbm | Update the block assignment of a node |
| vmeasure | V-measure |
