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#' One-sample Simultaneous Likelihood Ratio Test of Mean and Covariance
#'
#' Given a multivariate sample \eqn{X}, hypothesized mean \eqn{\mu_0} and covariance \eqn{\Sigma_0}, it tests
#' \deqn{H_0 : \mu_x = \mu_0 \textrm{ and } \Sigma_x = \Sigma_0 \quad vs\quad H_1 : \textrm{ not } H_0}
#' using the standard likelihood-ratio test procedure.
#'
#' @param X an \eqn{(n\times p)} data matrix where each row is an observation.
#' @param mu0 a length-\eqn{p} mean vector of interest.
#' @param Sigma0 a \eqn{(p\times p)} given covariance matrix.
#'
#' @return a (list) object of \code{S3} class \code{htest} containing: \describe{
#' \item{statistic}{a test statistic.}
#' \item{p.value}{\eqn{p}-value under \eqn{H_0}.}
#' \item{alternative}{alternative hypothesis.}
#' \item{method}{name of the test.}
#' \item{data.name}{name(s) of provided sample data.}
#' }
#'
#' @examples
#' ## CRAN-purpose small example
#' smallX = matrix(rnorm(10*3),ncol=3)
#' sim1.LRT(smallX) # run the test
#'
#' \dontrun{
#' ## empirical Type 1 error
#' niter = 1000
#' counter = rep(0,niter) # record p-values
#' for (i in 1:niter){
#' X = matrix(rnorm(100*10), ncol=10)
#' counter[i] = ifelse(sim1.LRT(X)$p.value < 0.05, 1, 0)
#' print(paste("* iteration ",i,"/1000 complete..."))
#' }
#'
#' ## print the result
#' cat(paste("\n* Example for 'sim1.LRT'\n","*\n",
#' "* number of rejections : ", sum(counter),"\n",
#' "* total number of trials : ", niter,"\n",
#' "* empirical Type 1 error : ",round(sum(counter/niter),5),"\n",sep=""))
#' }
#'
#' @concept simtest
#' @export
sim1.LRT <- function(X, mu0=rep(0,ncol(X)), Sigma0=diag(ncol(X))){
##############################################################
# PREPROCESSING
check_nd(X)
n = nrow(X)
p = ncol(X)
##############################################################
# CENTER AND SCALE PROPERLY
minusX = matrix(rep(mu0,n), ncol=p, byrow=TRUE)
scaler = aux_getinvroot(Sigma0)
Xnew = (X-minusX)%*%scaler
##############################################################
# COMPUTATION
xbar = as.vector(colMeans(Xnew))
S = stats::cov(Xnew)*(n-1)/n
LR = aux_trace(S) - base::log(base::det(S)) - p + base::sum(xbar*xbar)
thestat = n*LR
mydf = p*(1+p)/2 + p
pvalue = stats::pchisq(thestat, df=mydf, lower.tail = FALSE)
##############################################################
# REPORT
hname = "One-sample Simultaneous Likelihood Ratio Test of Mean and Covariance"
Ha = "both mean and covariance are not equal to mu0 and Sigma0."
DNAME = deparse(substitute(X))
names(thestat) = "statistic"
res = list(statistic=thestat, p.value=pvalue, alternative = Ha, method=hname, data.name = DNAME)
class(res) = "htest"
return(res)
}
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