Files in SMITIDstruct
Data Structure and Manipulations Tool for Host and Viral Population
MD5
LICENSE
DESCRIPTION
NAMESPACE
inst/extdata/data-simul/112_12.fasta
inst/extdata/data-simul/111_7.fasta
inst/extdata/data-simul/105_9.fasta
inst/extdata/data-simul/109_7.fasta
inst/extdata/data-simul/obs.txt
inst/extdata/data-simul/106_15.fasta
inst/extdata/data-simul/113_3.fasta
inst/extdata/data-simul/116_6.fasta
inst/extdata/data-simul/111_8.fasta
inst/extdata/data-simul/113_4.fasta
inst/extdata/data-simul/115_2.fasta
inst/extdata/data-simul/104_6.fasta
inst/extdata/data-simul/tree.txt
inst/extdata/data-simul/109_8.fasta
inst/extdata/data-simul/hosts_coords.txt
inst/extdata/data-simul/108_9.fasta
inst/extdata/data-simul/113_2.fasta
inst/extdata/data-simul/115_3.fasta
inst/extdata/data-simul/116_5.fasta
inst/extdata/data-simul/112_15.fasta
inst/extdata/data-simul/104_4.fasta
inst/extdata/data-simul/115_4.fasta
inst/extdata/data-simul/104_5.fasta
inst/extdata/data-simul/108_10.fasta
R/Methods-ViralPop.R
R/Methods-Host.R
R/SMITIDstruct.R
R/Class-ViralPop.R
R/index.R
R/demo.R
R/diversity.R
R/Class-Host.R
R/Methods-time.R
man/demo.SMITIDstruct.run.Rd
man/setStates.Rd
man/addcode.Rd
man/getInfosByHostAndTime.Rd
man/simulateStates.Rd
man/SMITIDstruct-package.Rd
man/isInCode.Rd
man/diversity.sfs.Rd
man/addHost.Rd
man/alleleCount.Rd
man/is.timestamp.Rd
man/loadStates.Rd
man/loadViralObs.Rd
man/getDiversity.pDistance.Rd
man/loadHost.Rd
man/loadTree.Rd
man/loadCoords.Rd
man/getStates.Rd
man/plotDiversity.sfs.Rd
man/getDate.Rd
man/createIndex.Rd
man/Host.Rd
man/loadCovs.Rd
man/getDiversity.sfs.Rd
man/concatViralPop.Rd
man/mergeCode.Rd
man/is.juliendate.Rd
man/plotDiversity.pDistance.Rd
man/addViralObs.Rd
man/ViralPop-class.Rd
man/diversity.pDistance.Rd
man/loadTreeDF.Rd
man/createHost.Rd
man/getTimeLine.Rd
man/getTransmissionTree.Rd
man/addIndex.Rd
man/getCov.Rd
man/is.StringDate.Rd
man/getTimestamp.Rd
man/loadViralPopSet.Rd
man/createAViralPop.Rd
man/loadViralPop.Rd
tests/testthat.R
tests/testthat/test-time.R
