SeuratObject: Data Structures for Single Cell Data

Defines S4 classes for single-cell genomic data and associated information, such as dimensionality reduction embeddings, nearest-neighbor graphs, and spatially-resolved coordinates. Provides data access methods and R-native hooks to ensure the Seurat object is familiar to other R users. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, Hao Y, Hao S, et al (2021) <doi:10.1016/j.cell.2021.04.048> and Hao Y, et al (2023) <doi:10.1101/2022.02.24.481684> for more details.

Package overview

Vignettes Man pages API and functions Files

Package details
Author	Paul Hoffman [aut] (<https://orcid.org/0000-0002-7693-8957>), Rahul Satija [aut, cre] (<https://orcid.org/0000-0001-9448-8833>), David Collins [aut] (<https://orcid.org/0000-0001-9243-7821>), Yuhan Hao [aut] (<https://orcid.org/0000-0002-1810-0822>), Austin Hartman [aut] (<https://orcid.org/0000-0001-7278-1852>), Gesmira Molla [aut] (<https://orcid.org/0000-0002-8628-5056>), Andrew Butler [aut] (<https://orcid.org/0000-0003-3608-0463>), Tim Stuart [aut] (<https://orcid.org/0000-0002-3044-0897>), Madeline Kowalski [ctb] (<https://orcid.org/0000-0002-5655-7620>), Saket Choudhary [ctb] (<https://orcid.org/0000-0001-5202-7633>), Skylar Li [ctb], Longda Jiang [ctb] (<https://orcid.org/0000-0003-4964-6497>), Jeff Farrell [ctb], Shiwei Zheng [ctb] (<https://orcid.org/0000-0001-6682-6743>), Christoph Hafemeister [ctb] (<https://orcid.org/0000-0001-6365-8254>), Patrick Roelli [ctb]
Maintainer	Rahul Satija <seurat@nygenome.org>
License	MIT + file LICENSE
Version	5.0.2
URL	https://satijalab.github.io/seurat-object/ https://github.com/satijalab/seurat-object
Package repository	View on CRAN
Installation	Install the latest version of this package by entering the following in R: `install.packages("SeuratObject")`