SeuratObject: Data Structures for Single Cell Data

Defines S4 classes for single-cell genomic data and associated information, such as dimensionality reduction embeddings, nearest-neighbor graphs, and spatially-resolved coordinates. Provides data access methods and R-native hooks to ensure the Seurat object is familiar to other R users. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, Hao Y, Hao S, et al (2021) <doi:10.1016/j.cell.2021.04.048> and Hao Y, et al (2023) <doi:10.1101/2022.02.24.481684> for more details.

Package details

AuthorPaul Hoffman [aut] (<>), Rahul Satija [aut, cre] (<>), David Collins [aut] (<>), Yuhan Hao [aut] (<>), Austin Hartman [aut] (<>), Gesmira Molla [aut] (<>), Andrew Butler [aut] (<>), Tim Stuart [aut] (<>), Madeline Kowalski [ctb] (<>), Saket Choudhary [ctb] (<>), Skylar Li [ctb], Longda Jiang [ctb] (<>), Jeff Farrell [ctb], Shiwei Zheng [ctb] (<>), Christoph Hafemeister [ctb] (<>), Patrick Roelli [ctb]
MaintainerRahul Satija <>
LicenseMIT + file LICENSE
Package repositoryView on CRAN
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SeuratObject documentation built on May 29, 2024, 12:31 p.m.